ExperimentSetReplicate

ExperimentSet4DNES53WJMNL
released

Integrated spatial genomics in mouse brain cortex: 2460 loci across the whole genome at 1-Mb resolution and 1200 loci across 20 regions at 25-kb resolution (DNA seqFISH+), 76 RNA species including mRNA, introns and ncRNAs (RNA seqFISH), 8 chromatin marks and nuclear bodies (sequential IF)

   May 16th, 2022 at 12:31pm
Source Publication
Single-cell nuclear architecture across cell types in the mouse brain.
Takei Y, Zheng S, et al., Science (New York, N.Y.) 2021

Note on FOF-CT file format  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
tissue
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 2460 loci (mouse), 1200 loci from 20 regions at 25-kb resolution (mouse), 78 RNAs (mouse), H3K27me2 (mouse), H4K20me3 (mouse), Sf3a2 mouse protein, H3K27me3 (mouse), H3K4me2 (mouse), H3K9me3 (mouse), Mecp2 mouse protein, mH2A.1 (mouse), LINE1 (mouse), Minor Satellite (mouse), Telomeres (mouse), SINEB1 (mouse), Major Satellite (mouse), Chromosomes

18 Processed Files

Experiment
File
File Type
File Size
Notes
Experiment
4DNEXWI45RB4
Bio Rep 1, Tec Rep 1
multiplexed FISH on cerebral cortex
FOF-CT - DNA-spot/trace core (csv)
72.73 MB
FOF-CT - DNA-spot/trace core (csv)
55.72 MB
FOF-CT - RNA-spot (csv)
1.23 MB
-
FOF-CT - cell data (csv)
142.4 kB
-
FOF-CT - spot quality (csv)
15.65 MB
FOF-CT - spot quality (csv)
12.66 MB
Experiment
4DNEX3SA9WZZ
Bio Rep 2, Tec Rep 1
multiplexed FISH on cerebral cortex
FOF-CT - DNA-spot/trace core (csv)
91.49 MB
FOF-CT - DNA-spot/trace core (csv)
59.04 MB
FOF-CT - RNA-spot (csv)
1.16 MB
-
FOF-CT - cell data (csv)
147.06 kB
-
FOF-CT - spot quality (csv)
19.87 MB
FOF-CT - spot quality (csv)
13.39 MB
Experiment
4DNEXELZLJ72
Bio Rep 3, Tec Rep 1
multiplexed FISH on cerebral cortex
FOF-CT - DNA-spot/trace core (csv)
155.47 MB
FOF-CT - DNA-spot/trace core (csv)
89.14 MB
FOF-CT - RNA-spot (csv)
1.32 MB
-
FOF-CT - cell data (csv)
207.66 kB
-
FOF-CT - spot quality (csv)
34.43 MB
FOF-CT - spot quality (csv)
20.28 MB