Included Properties
Data Type
Lab
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Status
Commendations
Warnings
5 Common Properties
Project
4DN
Experiment Category
Sequencing
Assay Details
Enzyme: MNase
Center
NOFIC - Dekker
Set Type
Replicate
26 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
Micro-C
HFF-hTERT
Micro-C on HFF cells - protocol variations
Formaldehyde
Enzyme
MNase
Micro-C
HFF-hTERT
Micro-C on HFF cells - protocol variations
Formaldehyde+EGS
Enzyme
MNase
Micro-C
HFF-hTERT
Micro-C on HFF cells - protocol variations
Formaldehyde+DSG
Enzyme
MNase
Micro-C
HeLa-S3
Micro-C on HeLa cells - protocol variations
Formaldehyde, non synchronized
Enzyme
MNase
Micro-C
HeLa-S3
Micro-C on HeLa cells - protocol variations
Formaldehyde+EGS, non synchronized
Enzyme
MNase
Micro-C
HeLa-S3
Micro-C on HeLa cells - protocol variations
Formaldehyde+DSG, non synchronized
Enzyme
MNase
Micro-C
HeLa-S3
Micro-C on HeLa cells - protocol variations
Formaldehyde, mitosis
Enzyme
MNase
Micro-C
HeLa-S3
Micro-C on HeLa cells - protocol variations
Formaldehyde+EGS, mitosis
Enzyme
MNase
Micro-C
HeLa-S3
Micro-C on HeLa cells - protocol variations
Formaldehyde+DSG, mitosis
Enzyme
MNase
Micro-C
HeLa-S3
Micro-C on HeLa cells - protocol variations
Formaldehyde, G1 phase
Enzyme
MNase
Micro-C
HeLa-S3
Micro-C on HeLa cells - protocol variations
Formaldehyde+EGS, G1 phase
Enzyme
MNase
Micro-C
HeLa-S3
Micro-C on HeLa cells - protocol variations
Formaldehyde+DSG, G1 phase
Enzyme
MNase
Micro-C
H1-hESC
Micro-C on H1 cells - protocol variations
Formaldehyde
Enzyme
MNase
Micro-C
H1-hESC
Micro-C on H1 cells - protocol variations
Formaldehyde+EGS
Enzyme
MNase
Micro-C
H1-hESC
Micro-C on H1 cells - protocol variations
Formaldehyde+DSG
Enzyme
MNase
Micro-C
H1-hESC differentiated to definitive endoderm
Micro-C on H1-DE cells - protocol variations
Formaldehyde
Enzyme
MNase
Micro-C
H1-hESC differentiated to definitive endoderm
Micro-C on H1-DE cells - protocol variations
Formaldehyde+EGS
Enzyme
MNase
Micro-C
H1-hESC differentiated to definitive endoderm
Micro-C on H1-DE cells - protocol variations
Formaldehyde+DSG
Enzyme
MNase
Micro-C
H1-hESC (Tier 1) differentiated to definitive endoderm
Micro-C on H1-DE cells - protocol variations
Formaldehyde+DSG, H1-DE (Tier 1)
Enzyme
MNase
Micro-C
WTC-11 AAVS1-GFP C28
Hi-C and Micro-C on WTC-11 derived iPS cells
Micro-C experiments - clone 28
Enzyme
MNase
Micro-C
WTC-11 AAVS1-GFP C6
Hi-C and Micro-C on WTC-11 derived iPS cells
Micro-C experiments - clone 6
Enzyme
MNase
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Flavopiridol treatment to arrest Pol II release
Enzyme
MNase
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Triptolide treatment to inhibit transcription initiation
Enzyme
MNase
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Wild type, no treatment
Enzyme
MNase