Search for ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

Included Properties

Data Type
  • ExperimentSetReplicate26
    • Lab
    Experiment Type
  • Hi-C
  • Micro-C26
    • Dataset
    Organism
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Publication
    Modifications
    Treatments
    Status
  • Released26
    • Commendations
    Warnings
    5 Common Properties
     Project
    4DN
     Experiment Category
    Sequencing
     Assay Details
    Enzyme: MNase
     Center
    NOFIC - Dekker
     Set Type
    Replicate
    26 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESZJMHC3O
    Micro-C
    HFF-hTERT
    Micro-C on HFF cells - protocol variations
    Formaldehyde
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESEGKQY7I
    Micro-C
    HFF-hTERT
    Micro-C on HFF cells - protocol variations
    Formaldehyde+EGS
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNES9X112GZ
    Micro-C
    HFF-hTERT
    Micro-C on HFF cells - protocol variations
    Formaldehyde+DSG
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESA645JZF
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde, non synchronized
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESA5PN8AB
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+EGS, non synchronized
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESCXWBAEE
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+DSG, non synchronized
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNES1UAI7F5
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde, mitosis
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESC9311OT
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+EGS, mitosis
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESRTUDA91
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+DSG, mitosis
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESM9M3FA4
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde, G1 phase
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESFT1GE12
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+EGS, G1 phase
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESGCCOT7T
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+DSG, G1 phase
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESKOBVYIY
    Micro-C
    H1-hESC
    Micro-C on H1 cells - protocol variations
    Formaldehyde
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESFEVMZ63
    Micro-C
    H1-hESC
    Micro-C on H1 cells - protocol variations
    Formaldehyde+EGS
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESEVQ1V15
    Micro-C
    H1-hESC
    Micro-C on H1 cells - protocol variations
    Formaldehyde+DSG
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESPPSOUKK
    Micro-C
    H1-hESC differentiated to definitive endoderm
    Micro-C on H1-DE cells - protocol variations
    Formaldehyde
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESN6KY4J7
    Micro-C
    H1-hESC differentiated to definitive endoderm
    Micro-C on H1-DE cells - protocol variations
    Formaldehyde+EGS
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESP4MARXG
    Micro-C
    H1-hESC differentiated to definitive endoderm
    Micro-C on H1-DE cells - protocol variations
    Formaldehyde+DSG
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESW1SPPTD
    Micro-C
    H1-hESC (Tier 1) differentiated to definitive endoderm
    Micro-C on H1-DE cells - protocol variations
    Formaldehyde+DSG, H1-DE (Tier 1)
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESWST3UBH
    Micro-C
    HFFc6 (Tier 1)
    Micro-C on H1 and HFF cells
    HFF
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESODGV2V2
    Micro-C
    WTC-11 AAVS1-GFP C28
    Hi-C and Micro-C on WTC-11 derived iPS cells
    Micro-C experiments - clone 28
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESAGG7EUC
    Micro-C
    WTC-11 AAVS1-GFP C6
    Hi-C and Micro-C on WTC-11 derived iPS cells
    Micro-C experiments - clone 6
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNES7X5GQUR
    Micro-C
    JM8.N4 (Tier 2)
    Micro-C on JM8.N4 Cells +/- transcription
    Flavopiridol treatment to arrest Pol II release
    Enzyme
    MNase
    Xavier Darzacq, BERKELEY
    4DNESSY8C22T
    Micro-C
    JM8.N4 (Tier 2)
    Micro-C on JM8.N4 Cells +/- transcription
    Triptolide treatment to inhibit transcription initiation
    Enzyme
    MNase
    Xavier Darzacq, BERKELEY
    4DNES14CNC1I
    Micro-C
    JM8.N4 (Tier 2)
    Micro-C on JM8.N4 Cells +/- transcription
    Wild type, no treatment
    Enzyme
    MNase
    Xavier Darzacq, BERKELEY