ExperimentSetReplicate

ExperimentSet4DNESEVQ1V15
released

Micro-C on H1 embryonic stem cells from Maehr lab with 1% Formaldehyde and 3mM DSG crosslinking

   June 27th, 2020 at 6:56pm
Source Publication
Systematic evaluation of chromosome conformation capture assays.
Akgol Oksuz B, Yang L, et al., Nature methods 2021

Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H1-hESC
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MNase

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESEVQ1V15
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIR1FK55F
190.62m
28.458%
62.746%
8.796%
Experiment
4DNEX8M8ALDF
Bio Rep 1, Tec Rep 1
Micro-C on H1-hESC with MNase
File
Contact List-replicate (pairs)
4DNFIKZ8N6AN
190.62m
28.458%
62.746%
8.796%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESEVQ1V15
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIJLK5WML
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX8M8ALDF
Bio Rep 1, Tec Rep 1
Micro-C on H1-hESC with MNase
File
Alignments (bam)
4DNFIU1244AU
369.75m
5.948%
18.978%
23.518%
0.003%
0.072%