ExperimentSetReplicate

ExperimentSet4DNESN6KY4J7
released

Micro-C on definitive endoderm derived from H1 embryonic stem cells (Maehr lab protocol) with 1% Formaldehyde and 3mM EGS crosslinking

   June 27th, 2020 at 6:56pm
Source Publication
Systematic evaluation of chromosome conformation capture assays
Betul Akgol Oksuz, Liyan Yang, et al., bioRxiv 2020

Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H1-hESC differentiated to definitive endoderm
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MNase

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESN6KY4J7
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI46W7VDQ
179.27m
25.917%
55.529%
18.554%
File
Contact List-replicate (pairs)
4DNFIPBMO7TB
179.27m
25.917%
55.529%
18.554%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIB9GCB84
348.71m
5.797%
18.637%
24.153%
0.003%
0.096%