ExperimentSetReplicate

ExperimentSet4DNES7X5GQUR
released

Micro-C on JM8.N4 with Flavopiridol treatment to arrest Pol II release

   May 29th, 2019 at 6:06pm
Source Publication

Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
JM8.N4 (Tier 2)
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: MNase

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7X5GQUR
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI8HJHIYX
55.35m
35.305%
59.028%
5.668%
Experiment
4DNEXB69NOCX
Bio Rep 1, Tec Rep 1
Micro-C on JM8.N4 (Tier 2) with MNase
File
Contact List-replicate (pairs)
4DNFIUTVHF29
55.35m
35.305%
59.028%
5.668%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7X5GQUR
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIHPRTZDW
1000; 2000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXB69NOCX
Bio Rep 1, Tec Rep 1
Micro-C on JM8.N4 (Tier 2) with MNase
File
Alignments (bam)
4DNFIUZJA74U
79.35m
4.612%
9.99%
6.263%
9.376%
0.066%