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Included Properties

Data Type
  • ExperimentSetReplicate125
    • Lab
    Experiment Type
    Dataset
    Sample
  • K562 (Tier 2)125
    • Publication
    Treatments
    Assay Details
    Center
    Set Type
  • Replicate125
    • Status
    Commendations
    Warnings
    9 Common Properties
     Project
    4DN
     Experiment Category
    Sequencing
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Tier 2
     Sample Category
    Tier 2
     Organ/System
    No value
     Tissue Source
    blood cell
     Modifications
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES4LFF2SB
    TSA-seq
    K562 (Tier 2)
    TSA-seq v2 Lamin B1 in k562
    condition2 - conditionAI - anti-Lamin B1
    Target
    LMNB1 protein
    Andrew Belmont, ILLINOIS
    4DNES6PKL6N2
    TSA-seq
    K562 (Tier 2)
    TSA-seq v2 Lamin B1 in k562
    input - condition2 - conditionAI - anti-Lamin B1
    Target
    LMNB1 protein
    Andrew Belmont, ILLINOIS
    4DNESV634K6K
    CUT&RUN
    K562 (Tier 2)
    H3K4me3 - K562
    Active Motif 39159
    Target
    H3K4me3
    Steve Henikoff, FREDHUTCH
    4DNESJZEUO8Q
    TSA-seq
    K562 (Tier 2)
    TSA-seq CENPB in k562 cells
    condition2 - conditionE - anti-CENPB
    Target
    CENPB protein
    Andrew Belmont, ILLINOIS
    4DNES3J3YVE2
    TSA-seq
    K562 (Tier 2)
    TSA-seq CENPB in k562 cells
    input - condition2 - conditionE - anti-CENPB
    Target
    CENPB protein
    Andrew Belmont, ILLINOIS
    4DNES4OMQCRI
    TSA-seq
    K562 (Tier 2)
    TSA-seq POL1RE in k562 cells
    condition2 - conditionE - anti-POL1RE
    Target
    POLR1E protein
    Andrew Belmont, ILLINOIS
    4DNESGSXHQA6
    TSA-seq
    K562 (Tier 2)
    TSA-seq POL1RE in k562 cells
    input - condition2 - conditionE - anti-POL1RE
    Target
    POLR1E protein
    Andrew Belmont, ILLINOIS
    4DNESI714SZN
    TSA-seq
    K562 (Tier 2)
    TSA-seq MKI67IP in k562 cells
    condition2 - conditionE - anti-MKI67IP
    Target
    NIFK protein
    Andrew Belmont, ILLINOIS
    4DNES1DRWZP5
    TSA-seq
    K562 (Tier 2)
    TSA-seq MKI67IP in k562 cells
    input - condition2 - conditionE - anti-MKI67IP
    Target
    NIFK protein
    Andrew Belmont, ILLINOIS
    4DNESIKCVASO
    MARGI
    K562 (Tier 2)
    iMARGI on K562 cells
    No treatment control
    Enzyme
    AluI
    Sheng Zhong, UCSD
    4DNESWX1J3QU
    PLAC-seq
    K562 (Tier 2)
    PLAC-Seq on K562 cells
    H3K4me3
    Target
    H3K4me3
    Bing Ren, UCSD
    4DNESW9DFOUO
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    5 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESJV8Z1WU
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    60 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESPM6NOA8
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    120 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESZVKV9TT
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    180 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESSU3FV7I
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    240 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESAJ1VRBJ
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    960 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNES4CZCCZJ
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    15 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESVKHHEJH
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    30 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNES85OKAHZ
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    45 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNES62GLTQQ
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    75 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNES34EJ5A5
    RE-seq
    K562 (Tier 2)
    DpnII-seq on K562 cells
    90 min digestion
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESR6PBOOT
    DamID-seq
    K562 (Tier 2)
    DamID-seq on K562 cells (2020-07-01)
    Dam-only control
    Target
    None (Control)
    Bas van Steensel, NKI
    4DNESR65C7PI
    DamID-seq
    K562 (Tier 2)
    DamID-seq on K562 cells (2020-07-01)
    Nucleolar Targeting Signal (4X-AP3)-Dam
    Target
    Nucleolus Localization Sequence (4X-AP3D1) (engineered reagent)
    Bas van Steensel, NKI
    4DNESIHH3TTN
    TSA-seq
    K562 (Tier 2)
    TSA-seq SON in K562 - HS
    Heat shock 30 min: input only - condition2
    Target
    SON protein
    Andrew Belmont, ILLINOIS