ExperimentSetReplicate

ExperimentSet4DNESV634K6K
released

Replicates of CUT&RUN on K562 cells using H3K4me3 (Active Motif 39159)

   March 14th, 2022 at 11:03pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Note: Superseding Item - 4DNESV634K6K  


This experiment set supersedes 4DNESC5FAH5U and 4DNESFLKY1BD because existing sets from the same line and using the same antibody that differed only in reaction time (a variable determined to not qualitatively affect the results) were merged into a single replicate set.

Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K4me3

4 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXHXAT1SW
Bio Rep 1, Tec Rep 1
CUT&RUN against H3K4me3 on K562 (Tier 2)
read positions (bam)
3.18 GB
File
no view permissions
-
Experiment
4DNEXQ33GCMG
Bio Rep 2, Tec Rep 1
CUT&RUN against H3K4me3 on K562 (Tier 2)
read positions (bam)
4.85 GB
File
no view permissions
-
Experiment
4DNEX3DU4IZ3
Bio Rep 3, Tec Rep 1
CUT&RUN against H3K4me3 on K562 (Tier 2)
read positions (bam)
5.58 GB
File
no view permissions
-