ExperimentSetReplicate

ExperimentSet4DNESR6PBOOT
released

DamID for Dam on K562 wildtype cells - cells were transduced with virus expressing a Dam fusion protein, gDNA was harvested after 3 or 4 days and processed for DamID-seq

   July 1st, 2020 at 7:53am

Caution:  


Please use caution when using this data. Nucleolar DamID has not been validated extensively. Preliminary analyses suggest a substantial difference in data quality between cell lines. We interpret this as a difference in information content along the chromosomes due to more pronounced nucleolar interactions in some cell lines.

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: None (Control)

6 Processed Files

Experiment
File
File Type
File Size
Notes
Experiment
4DNEXCI45K3S
Bio Rep 1, Tec Rep 1
DamID-seq on K562 (Tier 2)
alignments (bam)
165.38 MB
alignments (bam)
1.01 GB
Experiment
4DNEXSZ95DTY
Bio Rep 2, Tec Rep 1
DamID-seq on K562 (Tier 2)
alignments (bam)
194.73 MB
alignments (bam)
1.19 GB
Experiment
4DNEXPH6SFQU
Bio Rep 3, Tec Rep 1
DamID-seq on K562 (Tier 2)
alignments (bam)
1.53 GB
Experiment
4DNEXP3SV352
Bio Rep 4, Tec Rep 1
DamID-seq on K562 (Tier 2)
alignments (bam)
802.55 MB