ExperimentSetReplicate

ExperimentSet4DNESWX1J3QU
released

Replicates of H3K4me3 PLAC-seq on K562 cells

   June 16th, 2021 at 7:01pm

Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K4me3

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESWX1J3QU
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI33H8F87
192.83m
58.372%
25.766%
15.862%
Experiment
4DNEXRI3VAH3
Bio Rep 1, Tec Rep 1
PLAC-seq against H3K4me3 on K562 (Tier 2)
File
Contact List-replicate (pairs)
4DNFIIU9FJYU
97.35m
58.154%
25.894%
15.952%
Experiment
4DNEX2S1FUHN
Bio Rep 2, Tec Rep 1
PLAC-seq against H3K4me3 on K562 (Tier 2)
File
Contact List-replicate (pairs)
4DNFIQGPB4PA
95.48m
58.594%
25.635%
15.77%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESWX1J3QU
Multiple Experiments
File
Contact Matrix (mcool)
4DNFINDGV53G
1000; 2000; 5000; 10000; 25000; 50000; 100000; 250000; 500000; 1000000; 2500000; 5000000; 10000000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXRI3VAH3
Bio Rep 1, Tec Rep 1
PLAC-seq against H3K4me3 on K562 (Tier 2)
File
Alignments (bam)
4DNFIHRNTDUN
158.45m
15.57%
12.414%
5.295%
5.286%
0.222%
Experiment
4DNEX2S1FUHN
Bio Rep 2, Tec Rep 1
PLAC-seq against H3K4me3 on K562 (Tier 2)
File
Alignments (bam)
4DNFIUBN447H
155.89m
14.837%
12.388%
6.097%
5.429%
0.223%