Included Properties
Data Type
Lab
Experiment Type
Dataset
Sample
Organ/System
Publication
Assay Details
Center
Set Type
Status
Commendations
Warnings
9 Common Properties
Project
4DN
Experiment Category
Sequencing
Organism
Human
Sample Type
immortalized cells
Sample Tier
Tier 1
Sample Category
HFF (c6 or hTERT)
Tissue Source
skin fibroblast
Modifications
No value
Treatments
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
TSA-seq
HFFc6 (Tier 1)
TSA-seq CENPB in HFFc6 cells
condition2 - conditionE - anti-CENPB
Target
CENPB protein
TSA-seq
HFFc6 (Tier 1)
TSA-seq CENPB in HFFc6 cells
input - condition2 - conditionE - anti-CENPB
Target
CENPB protein
TSA-seq
HFFc6 (Tier 1)
TSA-seq POL1RE in HFFc6 cells
condition2 - conditionE - anti-POL1RE
Target
POLR1E protein
TSA-seq
HFFc6 (Tier 1)
TSA-seq POL1RE in HFFc6 cells
input - condition2 - conditionE - anti-POL1RE
Target
POLR1E protein
TSA-seq
HFFc6 (Tier 1)
TSA-seq MKI67IP in HFFc6 cells
condition2 - conditionE - anti-MKI67IP
Target
NIFK protein
TSA-seq
HFFc6 (Tier 1)
TSA-seq MKI67IP in HFFc6 cells
input - condition2 - conditionE - anti-MKI67IP
Target
NIFK protein
DamID-seq
HFFc6 (Tier 1)
DamID-seq on HFFc6 cells (2020-07-01)
Dam-only control
Target
None (Control)
DamID-seq
HFFc6 (Tier 1)
DamID-seq on HFFc6 cells (2020-07-01)
Nucleolar Targeting Signal (4X-AP3)-Dam
Target
Nucleolus Localization Sequence (4X-AP3D1) (engineered reagent)
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DpnII, HFFc6 (Tier 1)
Enzyme
DpnII
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DdeI and DpnII, HFFc6 (Tier 1)
Enzyme
DdeI and DpnII
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DdeI, HFFc6, (Tier 1)
Enzyme
DdeI
TSA-seq
HFFc6 (Tier 1)
TSA-seq v2 Lamin B1 in HFFc6
input - condition2 - conditionAI - anti-Lamin B1
Target
LMNB1 protein
TSA-seq
HFFc6 (Tier 1)
TSA-seq v2 Lamin B1 in HFFc6
condition2 - conditionAI - anti-Lamin B1
Target
LMNB1 protein
TSA-seq
HFFc6 (Tier 1)
TSA-seq v2 SON in HFFc6
input - condition2 - conditionE - no primary control
-
TSA-seq
HFFc6 (Tier 1)
TSA-seq v2 SON in HFFc6
condition2 - conditionE - no primary control
-
TSA-seq
HFFc6 (Tier 1)
TSA-seq v2 SON in HFFc6
input - condition2 - conditionE - anti-SON
Target
SON protein
TSA-seq
HFFc6 (Tier 1)
TSA-seq v2 SON in HFFc6
condition2 - conditionE - anti-SON
Target
SON protein
CUT&RUN
HFFc6 (Tier 1)
H2A.Z - HFFc6
Active Motif 39113
Target
H2A.Z protein
CUT&RUN
HFFc6 (Tier 1)
Ring1B - HFFc6
ab101273
Target
Ring2_1b protein