ExperimentSetReplicate

ExperimentSet4DNESIBPKCJK
released

Replicates CUT&RUN experiments on Hffc6 cells using H2A.Z (Active Motif 39113)

   June 20th, 2019 at 10:09pm

NOTE: Processed files temporarily restricted  


Due to an issue with the 4DN standardized pipeline for CUT&RUN some of the recently released files generated by this pipeline contain additional formatting or may have been incorrectly truncated. This not only interferes with Higlass visualization but may also lead to incorrect interpretation of results. We have restricted access to the files as we work to correct these errors. Please use caution if you have already obtained any of these files and plan to utilize them in your analyses.

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H2A.Z protein

32 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSW9W69YZ
Bio Replicate 1
Experiment
4DNEXLG3BBNB
Tech Replicate 1
Pair 1
105.67 MB
25
  Pass
4m
107.61 MB
25
  Pass
4m
Pair 2
16.45 MB
25
  Pass
616.54k
16.72 MB
25
  Pass
616.54k
Pair 3
105.45 MB
25
  Pass
4m
107.49 MB
25
  Pass
4m
Pair 4
13.8 MB
25
  Pass
517.94k
13.97 MB
25
  Pass
517.94k
Biosample
4DNBSYYWU79I
Bio Replicate 2
Experiment
4DNEXBDRKWDJ
Tech Replicate 1
Pair 1
105.54 MB
25
  Pass
4m
107.43 MB
25
  Pass
4m
Pair 2
9.6 MB
25
  Pass
358.33k
9.73 MB
25
  Pass
358.33k
Pair 3
105.3 MB
25
  Pass
4m
107.2 MB
25
  Pass
4m
Pair 4
7.34 MB
25
  Pass
274.24k
7.41 MB
25
  Pass
274.24k
Biosample
4DNBSTY9L2Q4
Bio Replicate 3
Experiment
4DNEXEJSRPHN
Tech Replicate 1
Pair 1
104.36 MB
25
  Pass
4m
105.81 MB
25
  Pass
4m
Pair 2
15.99 MB
25
  Pass
608.85k
16.2 MB
25
  Pass
608.85k
Pair 3
104.14 MB
25
  Pass
4m
105.69 MB
25
  Pass
4m
Pair 4
14.46 MB
25
  Pass
549.98k
14.65 MB
25
  Pass
549.98k
Biosample
4DNBSAZ76JBZ
Bio Replicate 4
Experiment
4DNEXU4GVYC8
Tech Replicate 1
Pair 1
104.49 MB
25
  Pass
4m
106.34 MB
25
  Pass
4m
Pair 2
45.3 MB
25
  Pass
1.73m
46.03 MB
25
  Pass
1.73m
Pair 3
104.3 MB
25
  Pass
4m
106.22 MB
25
  Pass
4m
Pair 4
43.36 MB
25
  Pass
1.66m
44.12 MB
25
  Pass
1.66m