ExperimentSet4DNES9Y1GHK4
released
July 1st, 2021 at 5:48pm
Source Publication
Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells.
Calandrelli R, Wen X, et al., Nature communications 2023
Assay Description
Note: Superseding Item - 4DNES9Y1GHK4
This experiment set supersedes 4DNESNGESP28 and 4DNESJC437VS because the replicate structure of the old set was determined to be incorrect as submitted. Experiments submitted as technical replicates were in fact biological replicates. Two of the technical replicates that corresponding to miseq QC runs have been removed and additional new sequencing replicates (i.e. new fastq files) have been added to each biological replicate experiment of the superseding replicate set. Due to the change in replicate structure new accessions have been assigned for experiments and biosamples, however, accessions for unchanged files are shared between the new and replaced replicate sets..
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
immortalized cells
Sample
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Enzyme: AluI
18 Processed Files
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>200000)
Short cis reads
Trans Reads
Details
Experiment
For File
Failed Balancing
Details