ExperimentSet4DNESNGESP28
replaced
November 28th, 2018 at 10:20am
Data Usage Guidelines
Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.
Assay Description
Note: This Experiment Set Supersedes - 4DNESJC437VS
This experiment set supercedes 4DNESJC437VS because new technical replicates were added.
Note: Replaced Item - 4DNESNGESP28
This experiment set was replaced by 4DNES9Y1GHK4 because the replicate structure of the old set was determined to be incorrect as submitted. Experiments submitted as technical replicates were in fact biological replicates. Two of the technical replicates that corresponding to miseq QC runs have been removed and additional new sequencing replicates (i.e. new fastq files) have been added to each biological replicate experiment of the superseding replicate set. Due to the change in replicate structure new accessions have been assigned for experiments and biosamples, however, accessions for unchanged files are shared between the new and replaced replicate sets..
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
immortalized cells
Sample
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Enzyme: AluI
10 Processed Files
Experiment
File
File Type
File Size
Notes
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>200000)
Short cis reads
Trans Reads
Details
Experiment
For File
Failed Balancing
Details