Experiment Set

4DNESDYES9QD
released
View JSON

Early and Late 2 phase Repliseq on unmodified iPSC cells

   November 1st, 2021 at 6:12pm
Source Publication
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, et al., Nature 2022

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
7889SA3.5
Experiment Type(s) 
2-stage Repli-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
  1. Fraction: early fraction of 2 fractions
  2. Fraction: late fraction of 2 fractions

16 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX4WG3TU8
2-stage Repli-seq on 7889SA3.5 S-phase early fraction
File
4DNFIXEJ67ID
alignments (bam)
779.21 MB
File
4DNFICLK7HFX
normalized counts (bg)
3.55 MB
File
4DNFIZSHXV5X
alignments (bam)
755.19 MB
File
4DNFIICL4BRO
normalized counts (bg)
3.54 MB
File
4DNFIO8UVRLO
alignments (bam)
773.28 MB
File
4DNFI2ARFU7W
normalized counts (bg)
3.55 MB
File
4DNFI5QYQTVQ
alignments (bam)
765.81 MB
File
4DNFI26127SN
normalized counts (bg)
3.54 MB
Experiment
4DNEXEVSWEJK
2-stage Repli-seq on 7889SA3.5 S-phase late fraction
File
4DNFIF525G67
alignments (bam)
836.34 MB
File
4DNFI54YGOGZ
normalized counts (bg)
3.57 MB
File
4DNFI5Q7RTAX
alignments (bam)
811.35 MB
File
4DNFIY14LMEE
normalized counts (bg)
3.56 MB
File
4DNFIAW41WOR
alignments (bam)
838.89 MB
File
4DNFIQEY3N2T
normalized counts (bg)
3.57 MB
File
4DNFIWJRBQLL
alignments (bam)
831.92 MB
File
4DNFIASLLU6W
normalized counts (bg)
3.57 MB

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEX4WG3TU8
2-stage Repli-seq on 7889SA3.5 S-phase early fraction
File
Alignments (bam)
4DNFIXEJ67ID
13.34m
0.0%
File
Alignments (bam)
4DNFIZSHXV5X
12.97m
0.0%
File
Alignments (bam)
4DNFIO8UVRLO
13.41m
1.748%
File
Alignments (bam)
4DNFI5QYQTVQ
13.3m
1.727%
Experiment
4DNEXEVSWEJK
2-stage Repli-seq on 7889SA3.5 S-phase late fraction
File
Alignments (bam)
4DNFIF525G67
14.82m
2.306%
File
Alignments (bam)
4DNFI5Q7RTAX
14.43m
2.266%
File
Alignments (bam)
4DNFIAW41WOR
14.9m
2.406%
File
Alignments (bam)
4DNFIWJRBQLL
14.8m
2.396%