ExperimentSetReplicate

ExperimentSet4DNES78Y8Y5K
replaced

Hi-C on h1ESC cells with HindIII

   September 7th, 2017 at 8:56pm

Note: Replaced Item - 4DNES78Y8Y5K  


This experiment set is replaced by 4DNESYTUBW2E. The experiment type was initially submitted as "Dilution Hi-C" but it was subsequently determined that the correct experiment type is "in situ Hi-C". In order to correct this mistake, this Experiment Set and associated Experiment have been replaced with new ones of the correct type. This correction does not affect any file or file processing pipeline associated with this data set. Both raw and processed files linked to this experiment or the associated items remain unchanged.

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

5 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES78Y8Y5K
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI733IUMB
179.59m
46.7%
22.919%
30.38%
Experiment
4DNEXQU2VELY
Bio Rep 1, Tec Rep 1
Dilution Hi-C on H1-hESC with HindIII
File
Contact List-replicate (pairs)
4DNFIHGRXQWZ
179.59m
46.7%
22.919%
30.38%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES78Y8Y5K
Multiple Experiments
File
Contact Matrix (mcool)
4DNFISWCOKN2
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQU2VELY
Bio Rep 1, Tec Rep 1
Dilution Hi-C on H1-hESC with HindIII
File
Alignments (bam)
4DNFIYPLRRSZ
383.12m
13.153%
14.412%
25.558%
0.002%
0.075%