ExperimentSet4DNESYTUBW2E
released
July 9th, 2020 at 10:45pm
Source Publication
Systematic evaluation of chromosome conformation capture assays.
WARNING: non-optimal cross-linking conditions
This dataset may be obtained with non-optimal cross-linking conditions (as demonstrated in the paper) and is reported here for documentation purposes.
Users interested in using Hi-C or Micro-C data from this project for alternative analyses are advised to use only datasets generated with the optimal cross-linking conditions of 1% Formaldehyde + 3mM DSG. The study authors further advise users to carefully select digestion enzymes and library size to fit their needs. A list of preferred datasets for re-use is provided.
Note: Superseding Item - 4DNESYTUBW2E
This experiment set is replacing 4DNES78Y8Y5K. The experiment type was initially submitted as "Dilution Hi-C" but it was subsequently determined that the correct experiment type is "in situ Hi-C". In order to correct this mistake, the old Experiment Set and associated Experiment have been replaced with new ones of the correct type. This correction does not affect any file or file processing pipeline associated with this data set. Both raw and processed files linked to this experiment or the associated items remain unchanged.