File4DNFISWCOKN2
released
March 5th, 2018 at 10:09pm
Note(s)
- The experiment linked to this file was initially submitted as "Dilution Hi-C" but it was subsequently determined that the correct experiment type is "in situ Hi-C". In order to correct this mistake the old Experiment and associated Replicate Set have been replaced with new ones of the correct type. This correction does not affect this or any other file or file processing pipeline associated with this data set. Both raw and processed files linked to this file or the associated items remain unchanged.
- WARNING - Due to a bug in the version of cooler (0.8.3) used in the current 4DN standard Hi-C processing pipeline some pixels may occur mulitple times at a single resolution with different counts being reported for each occurence. This duplication does not affect the higlass display of these files, howevver, downstream analyses using this file may encounter issues due to this pixel duplication. The counts from the duplicate pixels can be aggregated to determine the correct count value at that location. If this issue is problematic for your needs you should consider regenerating the matrices from the merged pairs file of the associated dataset using a more recent version of cooler. We are working to update the pipeline but do not yet have a predicted date for when this issue will be resolved.
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Quality Metric Summary
Failed Balancing
None