ExperimentHiC Dilution Hi-C on H1-hESC with HindIII

Dilution Hi-C4DNEXQU2VELY
replaced
   September 7th, 2017 at 8:56pm

Note: Replaced Item - 4DNEXQU2VELY  


This experiment is replaced by 4DNEXP6V97PN. The experiment type was initially submitted as "Dilution Hi-C" but it was subsequently determined that the correct experiment type is "in situ Hi-C". In order to correct this mistake, this Experiment and associated Replicate Set have been replaced with new ones of the correct type. This correction does not affect any file or file processing pipeline associated with this data set. Both raw and processed files linked to this experiment or the associated items remain unchanged.


Properties  


Experiment Type 
Follows SOP 
No
Biosample 
Digestion Enzyme 
Biosample Modifications 
None
Biosample Treatments 
None
Biosample Biosource 

2 Processed Files

Experiment
File
File Type
File Size
Notes
alignments (bam)
27.84 GB
contact list-replicate (pairs)
3.14 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIYPLRRSZ
383.12m
13.153%
14.412%
25.558%
0.002%
0.075%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
File
Contact List-replicate (pairs)
4DNFIHGRXQWZ
179.59m
46.7%
22.919%
30.38%