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Properties

Experiment Type
Sample Tier
Sample
Publication
Assay Details
Warnings
13 Common Properties
 Project
4DN
 Lab
Job Dekker, UMMS
 Experiment Category
Sequencing
 Organism
Human
 Sample Type
immortalized cells
 Sample Category
HFF (c6 or hTERT)
 Tissue Source
skin fibroblast
 Modifications
No value
 Treatments
No value
 Center
NOFIC - Dekker
 Status
Released
 Commendations
No value
 Validation Errors
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Enzyme DpnII - in situ Hi-C on HFFc6 (4DN Tier1 clone) with 4DN cell culture SOP.
Enzyme
DpnII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme NcoI - in situ Hi-C on HFF-hTERT cells grown on beads
Enzyme
NcoI
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme HindIII - in situ Hi-C on HFF-hTERT cells grown on beads
Enzyme
HindIII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme HindIII - in situ Hi-C on HFF cells grown on plate
Enzyme
HindIII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme MboI - in situ Hi-C on HFF cells grown on beads
Enzyme
MboI
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme DpnII - in situ Hi-C on HFF cells grown on beads
Enzyme
DpnII
Dilution Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme HindIII - Dilution Hi-C on cells cultured prior to 4DN SOP
Enzyme
HindIII
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