ExperimentSetReplicate

ExperimentSet4DNESB6MNCFE
released

Hi-C on HFF cells grown on beads with HindIII technical replicates

   September 7th, 2017 at 8:56pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESB6MNCFE
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIK4PEOP8
408.43m
56.529%
23.498%
19.973%
Experiment
4DNEXITSUDKV
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFIL8A48BN
202.76m
56.5%
23.534%
19.966%
Experiment
4DNEXQ83CMK6
Bio Rep 1, Tec Rep 2
in situ Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFI64TTB1C
205.67m
56.557%
23.463%
19.981%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESB6MNCFE
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIQJQY7PW
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXITSUDKV
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFIDIBHJW7
353.67m
13.517%
14.267%
14.884%
0.002%
0.085%
Experiment
4DNEXQ83CMK6
Bio Rep 1, Tec Rep 2
in situ Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFIXLD5KA2
366.85m
13.421%
14.284%
16.23%
0.002%
0.083%