ExperimentSetReplicate

ExperimentSet4DNESVUMGLG2
released

Hi-C on HFF cells grown on beads with DpnII

   September 7th, 2017 at 8:56pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESVUMGLG2
Multiple Experiments
File
Contact List-combined (pairs)
4DNFINFW7GAJ
354.48m
50.618%
27.348%
22.034%
Experiment
4DNEXQH8J6ZV
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFF-hTERT with DpnII
File
Contact List-replicate (pairs)
4DNFIOYAO8IF
180.69m
49.464%
27.486%
23.05%
Experiment
4DNEX2GKXO5V
Bio Rep 1, Tec Rep 2
in situ Hi-C on HFF-hTERT with DpnII
File
Contact List-replicate (pairs)
4DNFIN1XTP8M
173.79m
51.817%
27.205%
20.978%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESVUMGLG2
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI6GRWM8P
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQH8J6ZV
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFF-hTERT with DpnII
File
Alignments (bam)
4DNFIWX5TD91
382.59m
13.283%
25.941%
13.542%
0.005%
0.196%
Experiment
4DNEX2GKXO5V
Bio Rep 1, Tec Rep 2
in situ Hi-C on HFF-hTERT with DpnII
File
Alignments (bam)
4DNFI29YH6GL
383.23m
13.323%
23.075%
18.247%
0.007%
0.154%