ExperimentSetReplicate

ExperimentSet4DNES9L4AK6Q
released

Hi-C on HFF-hTERT cells technical replicates.

   August 21st, 2017 at 8:58pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HFF-hTERT
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

11 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES9L4AK6Q
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIQJLTRNZ
760.12m
36.851%
20.082%
43.066%
Experiment
4DNEXA88T4X7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFIZWEE353
77.08m
29.268%
28.419%
42.314%
Experiment
4DNEXHQU7ZRM
Bio Rep 1, Tec Rep 2
Dilution Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFI2KMRDTF
95.42m
31.871%
27.848%
40.281%
Experiment
4DNEXI15QCIB
Bio Rep 1, Tec Rep 4
Dilution Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFIN5BWCF2
316.66m
35.434%
17.076%
47.49%
Experiment
4DNEXTBPQFO5
Bio Rep 1, Tec Rep 3
Dilution Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFI5M796WN
270.96m
42.418%
18.49%
39.091%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXA88T4X7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFIU6BY3B8
122.61m
14.834%
15.06%
7.242%
0.001%
0.16%
Experiment
4DNEXHQU7ZRM
Bio Rep 1, Tec Rep 2
Dilution Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFIMG1OUEQ
150.32m
14.067%
15.31%
7.146%
0.001%
0.162%
Experiment
4DNEXI15QCIB
Bio Rep 1, Tec Rep 4
Dilution Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFIADEC6QY
597.78m
15.612%
15.401%
16.014%
0.001%
0.178%
Experiment
4DNEXTBPQFO5
Bio Rep 1, Tec Rep 3
Dilution Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFIIKB63VD
583.39m
15.517%
14.789%
23.247%
0.001%
0.08%