ExperimentSetReplicate

ExperimentSet4DNES9L4AK6Q
released

Hi-C on HFF-hTERT cells technical replicates.

   August 21st, 2017 at 8:58pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HFF-hTERT
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

11 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNES9L4AK6Q
Multiple Experiments
contact list-combined (pairs)
13.41 GB
contact matrix (hic)
7.2 GB
contact matrix (mcool)
8.04 GB
Experiment
4DNEXA88T4X7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HFF-hTERT with HindIII
alignment (bam)
13 GB
contact list-replicate (pairs)
1.4 GB
Experiment
4DNEXHQU7ZRM
Bio Rep 1, Tec Rep 2
Dilution Hi-C on HFF-hTERT with HindIII
alignment (bam)
16.43 GB
contact list-replicate (pairs)
1.73 GB
Experiment
4DNEXI15QCIB
Bio Rep 1, Tec Rep 4
Dilution Hi-C on HFF-hTERT with HindIII
alignment (bam)
70.82 GB
contact list-replicate (pairs)
5.94 GB
Experiment
4DNEXTBPQFO5
Bio Rep 1, Tec Rep 3
Dilution Hi-C on HFF-hTERT with HindIII
alignment (bam)
66.38 GB
contact list-replicate (pairs)
5.04 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
From Multiple Experiments
4DNES9L4AK6Q
Multiple Experiments
760.12m
36.851%
20.082%
43.066%
Experiment
4DNEXA88T4X7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HFF-hTERT with HindIII
77.08m
29.268%
28.419%
42.314%
Experiment
4DNEXHQU7ZRM
Bio Rep 1, Tec Rep 2
Dilution Hi-C on HFF-hTERT with HindIII
95.42m
31.871%
27.848%
40.281%
Experiment
4DNEXI15QCIB
Bio Rep 1, Tec Rep 4
Dilution Hi-C on HFF-hTERT with HindIII
316.66m
35.434%
17.076%
47.49%
Experiment
4DNEXTBPQFO5
Bio Rep 1, Tec Rep 3
Dilution Hi-C on HFF-hTERT with HindIII
270.96m
42.418%
18.49%
39.091%