Included Properties
Data Type
Lab
Experiment Category
Experiment Type
Dataset
Sample Category
Sample
Publication
Assay Details
Center
Set Type
Commendations
Warnings
9 Common Properties
Project
4DN
Organism
Mouse
Sample Type
stem cells
Sample Tier
Tier 2
Organ/System
No value
Tissue Source
stem cell
Modifications
No value
Treatments
No value
Status
Released
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
PLAC-seq
F121-9-CASTx129 (Tier 2)
PLAC-seq time course of EpiLC differentiation
0 h, SMC1A
Target
Smc1a (mouse)
PLAC-seq
F121-9-CASTx129 (Tier 2)
PLAC-seq time course of EpiLC differentiation
0 h, H3K27ac
Target
H3K27ac (mouse)
RNA-seq
F121-9-CASTx129 (Tier 2)
RNA-seq time course of EpiLC differentiation
0 h
-
ChIP-seq
F121-9-CASTx129 (Tier 2)
ChIP-seq time course of EpiLC differentiation
confluent mESCs
Target
H3K27ac (mouse)
ChIP-seq
F121-9-CASTx129 (Tier 2)
ChIP-seq time course of EpiLC differentiation
0 h
Target
H3K27ac (mouse)
ATAC-seq
F121-9-CASTx129 (Tier 2)
ATAC-seq time course of EpiLC differentiation
0 h
-
DNA FISH
F121-9-CASTx129 (Tier 2)
DNA-FISH in F121-9 cells
non-NAD BAC probe pPK1003
Target
Nucleolus, GRCm38:15:84216729-84409126 mouse region, Chromosomes
DNA FISH
F121-9-CASTx129 (Tier 2)
DNA-FISH in F121-9 cells
non-NAD BAC probe pPK1000, IF Ab nuclephosmin
Target
Nucleolus, GRCm38:7:130062900-130222254 mouse region, Chromosomes
DNA FISH
F121-9-CASTx129 (Tier 2)
DNA-FISH in F121-9 cells
non-NAD BAC probe pPK1000
Target
Nucleolus, GRCm38:7:130062900-130222254 mouse region, Chromosomes
DNA FISH
F121-9-CASTx129 (Tier 2)
DNA-FISH in F121-9 cells
NAD BAC probe pPK999, IF Ab nucleophosmin
Target
Nucleolus, GRCm38:11:16745166-16937185 mouse region, Chromosomes
DNA FISH
F121-9-CASTx129 (Tier 2)
DNA-FISH in F121-9 cells
NAD BAC probe pPK999
Target
Nucleolus, GRCm38:11:16745166-16937185 mouse region, Chromosomes
DNA FISH
F121-9-CASTx129 (Tier 2)
DNA-FISH in F121-9 cells
NAD BAC probe pPK915
Target
Nucleolus, GRCm38:17:12456384-12690495 mouse region, Chromosomes
DNA FISH
F121-9-CASTx129 (Tier 2)
DNA-FISH in F121-9 cells
NAD BAC probe pPK914
Target
Nucleolus, GRCm38:16:95182165-95358805 mouse region, Chromosomes
DNA FISH
F121-9-CASTx129 (Tier 2)
DNA-FISH in F121-9 cells
non-NAD BAC probe pPK871
Target
Nucleolus, GRCm38:12:110758289-111006192 mouse region, Chromosomes
DNA FISH
F121-9-CASTx129 (Tier 2)
DNA-FISH in F121-9 cells
non-NAD BAC probe pPK825
Target
Nucleolus, GRCm38:17:34211624-34393919 mouse region, Chromosomes
RNA-seq
F121-9-CASTx129 (Tier 2)
RNA-seq on F121-9 mES cells
wt cell line
-
NAD-seq
F121-9-CASTx129 (Tier 2)
NAD-seq on Tier 2 cell line F121-9-CASTx129
nucleolar-associated DNA
Target
Nucleolus
NAD-seq
F121-9-CASTx129 (Tier 2)
NAD-seq on Tier 2 cell line F121-9-CASTx129
control (WGS)
Target
None (Control)
DamID-seq
F121-9-CASTx129 (Tier 2)
DamID-seq on F121-9 cells (2018-10-22)
Dam-only Control
Target
None (Control)
DamID-seq
F121-9-CASTx129 (Tier 2)
DamID-seq on F121-9 cells (2018-10-22)
LaminB1-Dam
Target
Lmnb1 mouse protein
2-stage Repli-seq
F121-9-CASTx129 (Tier 2)
E/L repliseq on F121-9 cells differentiated to NPCs (2018-07-26)
late
Fraction
late fraction of 2 fractions
2-stage Repli-seq
F121-9-CASTx129 (Tier 2)
E/L repliseq on F121-9 cells differentiated to NPCs (2018-07-26)
early
Fraction
early fraction of 2 fractions
2-stage Repli-seq
F121-9-CASTx129 (Tier 2)
E/L repliseq on Cas129 ESCs on 2i (2018-07-26)
late
Fraction
late fraction of 2 fractions
2-stage Repli-seq
F121-9-CASTx129 (Tier 2)
E/L repliseq on Cas129 ESCs on 2i (2018-07-26)
early
Fraction
early fraction of 2 fractions
2-stage Repli-seq
F121-9-CASTx129 (Tier 2)
E/L repliseq on F121-9-CASTX129 ESCs in 2i (2018-07-26)
late
Fraction
late fraction of 2 fractions