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Data Type
  • ExperimentSetReplicate47
    • Lab
    Experiment Category
    Experiment Type
    Dataset
    Sample Category
    Sample
  • F121-9-CASTx129 (Tier 2)47
    • Publication
    Assay Details
    Center
    Set Type
  • Replicate47
    • Commendations
    Warnings
    9 Common Properties
     Project
    4DN
     Organism
    Mouse
     Sample Type
    stem cells
     Sample Tier
    Tier 2
     Organ/System
    No value
     Tissue Source
    stem cell
     Modifications
    No value
     Treatments
    No value
     Status
    Released
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES4R1QTMH
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S16
    Fraction
    P17 of 16 fractions
    David Gilbert, SDBRI
    4DNESYNW2U4N
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S15
    Fraction
    P16 of 16 fractions
    David Gilbert, SDBRI
    4DNES1UZQ9N1
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S14
    Fraction
    P15 of 16 fractions
    David Gilbert, SDBRI
    4DNESOQCYDUP
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S13
    Fraction
    P14 of 16 fractions
    David Gilbert, SDBRI
    4DNESEDDAFXJ
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S12
    Fraction
    P13 of 16 fractions
    David Gilbert, SDBRI
    4DNESE9YSNHG
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S11
    Fraction
    P12 of 16 fractions
    David Gilbert, SDBRI
    4DNESEUQTOCO
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S10
    Fraction
    P11 of 16 fractions
    David Gilbert, SDBRI
    4DNESX9M711O
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S9
    Fraction
    P10 of 16 fractions
    David Gilbert, SDBRI
    4DNESAPF386Z
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S8
    Fraction
    P9 of 16 fractions
    David Gilbert, SDBRI
    4DNESVU5GKB6
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S7
    Fraction
    P8 of 16 fractions
    David Gilbert, SDBRI
    4DNESLT5GFMB
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S6
    Fraction
    P7 of 16 fractions
    David Gilbert, SDBRI
    4DNESN64V77Y
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S5
    Fraction
    P6 of 16 fractions
    David Gilbert, SDBRI
    4DNESK8BN6XZ
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S4
    Fraction
    P5 of 16 fractions
    David Gilbert, SDBRI
    4DNES64IQ3MX
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S3
    Fraction
    P4 of 16 fractions
    David Gilbert, SDBRI
    4DNESNVWRLPM
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S2
    Fraction
    P3 of 16 fractions
    David Gilbert, SDBRI
    4DNESD3EBQYY
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    S1
    Fraction
    P2 of 16 fractions
    David Gilbert, SDBRI
    4DNESYXZBVRS
    Multi-stage Repli-seq
    F121-9-CASTx129 (Tier 2)
    16-fraction Repli-seq on F121-9 mouse ESC
    G1
    Fraction
    G1 of 16 fractions
    David Gilbert, SDBRI
    4DNESJ3HA5IB
    PLAC-seq
    F121-9-CASTx129 (Tier 2)
    PLAC-seq time course of EpiLC differentiation
    0 h, SMC1A
    Target
    Smc1a (mouse)
    Joanna Wysocka, STANFORD
    4DNESJF23KK1
    PLAC-seq
    F121-9-CASTx129 (Tier 2)
    PLAC-seq time course of EpiLC differentiation
    0 h, H3K27ac
    Target
    H3K27ac (mouse)
    Joanna Wysocka, STANFORD
    4DNESOTEDQUZ
    RNA-seq
    F121-9-CASTx129 (Tier 2)
    RNA-seq time course of EpiLC differentiation
    0 h
    -
    Karen Adelman, HARVARD
    4DNESQ33L4G7
    ChIP-seq
    F121-9-CASTx129 (Tier 2)
    ChIP-seq time course of EpiLC differentiation
    confluent mESCs
    Target
    H3K27ac (mouse)
    Karen Adelman, HARVARD
    4DNESX1HTE4K
    ChIP-seq
    F121-9-CASTx129 (Tier 2)
    ChIP-seq time course of EpiLC differentiation
    0 h
    Target
    H3K27ac (mouse)
    Karen Adelman, HARVARD
    4DNESXQALDXD
    ATAC-seq
    F121-9-CASTx129 (Tier 2)
    ATAC-seq time course of EpiLC differentiation
    0 h
    -
    Karen Adelman, HARVARD
    4DNESA84SNKC
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    non-NAD BAC probe pPK1003
    Target
    Nucleolus, Chromosomes, GRCm38:15:84216729-84409126 mouse region
    Paul Kaufman, UMMS
    4DNESHGVPOOW
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    non-NAD BAC probe pPK1000, IF Ab nuclephosmin
    Target
    Nucleolus, Chromosomes, GRCm38:7:130062900-130222254 mouse region
    Paul Kaufman, UMMS