ExperimentSetReplicate

ExperimentSet4DNESOTEDQUZ
released

Total RNA-seq time course of EpiLC differentiation in F121-9 mESCs, 0hr time point

   January 22nd, 2021 at 12:35am

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXA7YBEEP
Bio Rep 1, Tec Rep 1
RNA-seq on F121-9-CASTx129 (Tier 2)
File
Read Positions (bam)
4DNFIZ5D6VYL
58.35m
47.43m
Experiment
4DNEX6HFLD9Z
Bio Rep 2, Tec Rep 1
RNA-seq on F121-9-CASTx129 (Tier 2)
File
Read Positions (bam)
4DNFI7JZIHGI
69.46m
54.9m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXA7YBEEP
Bio Rep 1, Tec Rep 1
RNA-seq on F121-9-CASTx129 (Tier 2)
File
Gene Expression (tsv)
4DNFIULVHO1M
73.88m
24.83k
Experiment
4DNEX6HFLD9Z
Bio Rep 2, Tec Rep 1
RNA-seq on F121-9-CASTx129 (Tier 2)
File
Gene Expression (tsv)
4DNFIXSIRW4C
84.26m
70.34k