Data Browser
Filter & browse experiments

Included Properties

Data Type
  • ExperimentSetReplicate24
    • Lab
    Experiment Category
    Experiment Type
    Dataset
    Sample
  • RPE-hTERT (Tier 2)24
    • Organ/System
    Publication
    Assay Details
    Center
    Set Type
  • Replicate24
    • Status
    Commendations
    Warnings
    8 Common Properties
     Project
    4DN
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Tier 2
     Sample Category
    Tier 2
     Tissue Source
    retinal pigment epithelial cell
     Modifications
    No value
     Treatments
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESTJZUP4P
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Chromatin tracing of chrX
    RPE-1 cells, untreated
    Target
    28 consecutive 30-kb loci on chrX, mH2A.1
    Siyuan Wang, YALE
    4DNESOAM6EU7
    DamID-seq
    RPE-hTERT (Tier 2)
    DamID-seq on RPE cells (2020-07-01)
    Dam-only control
    Target
    None (Control)
    Bas van Steensel, NKI
    4DNESDDVKK5G
    DamID-seq
    RPE-hTERT (Tier 2)
    DamID-seq on RPE cells (2020-07-01)
    Nucleolar Targeting Signal (4X-AP3)-Dam
    Target
    Nucleolus Localization Sequence (4X-AP3D1) (engineered reagent)
    Bas van Steensel, NKI
    4DNESENITEIC
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    LaminB1 antibody
    Target
    LMNB1 protein
    Bas van Steensel, NKI
    4DNESG2OY6X6
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    Dam control for normalization
    -
    Bas van Steensel, NKI
    4DNESOJ9TTZ4
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    Dam control for normalization - synchronized 21h after mitotic shakeoff
    -
    Bas van Steensel, NKI
    4DNESCV5K8DN
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    Dam control for normalization - synchronized 10h after mitotic shakeoff
    -
    Bas van Steensel, NKI
    4DNESFE8B397
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    Dam control for normalization - synchronized 6h after mitotic shakeoff
    -
    Bas van Steensel, NKI
    4DNESV77JDCG
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    Dam control for normalization - synchronized 3h after mitotic shakeoff
    -
    Bas van Steensel, NKI
    4DNES4N7L5WN
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    Dam control for normalization - synchronized 1h after mitotic shakeoff
    -
    Bas van Steensel, NKI
    4DNESRCO6CCS
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    LaminB2 antibody - synchronized 21h after mitotic shakeoff
    Target
    LMNB2 protein
    Bas van Steensel, NKI
    4DNESEY3XV4R
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    LaminB2 antibody - synchronized 10h after mitotic shakeoff
    Target
    LMNB2 protein
    Bas van Steensel, NKI
    4DNES19V4V3C
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    LaminB2 antibody - synchronized 6h after mitotic shakeoff
    Target
    LMNB2 protein
    Bas van Steensel, NKI
    4DNESHW8QWZH
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    LaminB2 antibody - synchronized 3h after mitotic shakeoff
    Target
    LMNB2 protein
    Bas van Steensel, NKI
    4DNES4JFI13T
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    LaminB2 antibody - synchronized 1h after mitotic shakeoff
    Target
    LMNB2 protein
    Bas van Steensel, NKI
    4DNESVICLFBO
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    LaminAC antibody - attached cells
    Target
    LaminA/C protein
    Bas van Steensel, NKI
    4DNESVDGGATC
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    LaminB2 antibody - attached cells
    Target
    LMNB2 protein
    Bas van Steensel, NKI
    4DNES3OE19Q9
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    Dam control for normalization - attached cells
    -
    Bas van Steensel, NKI
    4DNESQPX39AA
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    LaminAC antibody
    Target
    LaminA/C protein
    Bas van Steensel, NKI
    4DNESLW3KNDU
    pA-DamID
    RPE-hTERT (Tier 2)
    pADamID on RPE
    LaminB2 antibody
    Target
    LMNB2 protein
    Bas van Steensel, NKI
    4DNES7QSJV2E
    DamID-seq
    RPE-hTERT (Tier 2)
    DamID-seq on RPE cells (2018-10-22)
    Dam-only Control
    Target
    None (Control)
    Bas van Steensel, NKI
    4DNESHGTQ73M
    DamID-seq
    RPE-hTERT (Tier 2)
    DamID-seq on RPE cells (2018-10-22)
    LaminB1-Dam
    Target
    LMNB1 protein
    Bas van Steensel, NKI
    4DNES674QWXK
    2-stage Repli-seq
    RPE-hTERT (Tier 2)
    E/L repliseq on RPE-1 hTERT cells (2017-08-17)
    late
    Fraction
    late fraction of 2 fractions
    David Gilbert, SDBRI
    4DNESUNOW1OZ
    2-stage Repli-seq
    RPE-hTERT (Tier 2)
    E/L repliseq on RPE-1 hTERT cells (2017-08-17)
    early
    Fraction
    early fraction of 2 fractions
    David Gilbert, SDBRI
    - fin -