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Included Properties

Data Type
  • ExperimentSetReplicate73
    • Lab
    Experiment Type
    Dataset
    Sample Category
    Sample
  • H1-hESC (Tier 1)73
    • Publication
    Treatments
    Assay Details
    Center
    Set Type
  • Replicate73
    • Status
    Commendations
    Warnings
    8 Common Properties
     Project
    4DN
     Experiment Category
    Sequencing
     Organism
    Human
     Sample Type
    stem cells
     Sample Tier
    Tier 1
     Organ/System
    No value
     Tissue Source
    stem cell
     Modifications
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESSJEFJKQ
    CUT&RUN
    H1-hESC (Tier 1)
    H2A.Z - H1-ESC
    Active Motif 39113
    Target
    H2A.Z protein
    Steve Henikoff, FREDHUTCH
    4DNES3IOYG74
    RNA-seq
    H1-hESC (Tier 1)
    RNA-seq on H1-hESC (Tier 1)
    H1-hESC
    -
    Rene Maehr, UMMS
    4DNESZ56GKCP
    TSA-seq
    H1-hESC (Tier 1)
    TSA-seq CENPB in H1 cells
    condition2 - conditionE - anti-CENPB
    Target
    CENPB protein
    Andrew Belmont, ILLINOIS
    4DNESMNB2I5A
    TSA-seq
    H1-hESC (Tier 1)
    TSA-seq CENPB in H1 cells
    input - condition2 - conditionE - anti-CENPB
    Target
    CENPB protein
    Andrew Belmont, ILLINOIS
    4DNESIH5OOWT
    TSA-seq
    H1-hESC (Tier 1)
    TSA-seq POL1RE in H1 cells
    condition2 - conditionE - anti-POL1RE
    Target
    POLR1E protein
    Andrew Belmont, ILLINOIS
    4DNESBRNMFK6
    TSA-seq
    H1-hESC (Tier 1)
    TSA-seq POL1RE in H1 cells
    input - condition2 - conditionE - anti-POL1RE
    Target
    POLR1E protein
    Andrew Belmont, ILLINOIS
    4DNESO6HFSAD
    TSA-seq
    H1-hESC (Tier 1)
    TSA-seq MKI67IP in H1 cells
    condition2 - conditionE - anti-MKI67IP
    Target
    NIFK protein
    Andrew Belmont, ILLINOIS
    4DNES6PANOF4
    TSA-seq
    H1-hESC (Tier 1)
    TSA-seq MKI67IP in H1 cells
    input - condition2 - conditionE - anti-MKI67IP
    Target
    NIFK protein
    Andrew Belmont, ILLINOIS
    4DNESASBN1JK
    DNA SPRITE
    H1-hESC (Tier 1)
    SPRITE on H1 cells
    -
    -
    Mitchell Guttman, CALTECH
    4DNESTMV12PW
    ChIP-seq
    H1-hESC (Tier 1)
    ChIP-seq on H1-hESC (Tier1) cells
    input
    Target
    None (Control)
    Rene Maehr, UMMS
    4DNES9LB37LR
    ChIP-seq
    H1-hESC (Tier 1)
    ChIP-seq on H1-hESC (Tier1) cells
    H3K4me3
    Target
    H3K4me3
    Rene Maehr, UMMS
    4DNESNWS32Z2
    ChIP-seq
    H1-hESC (Tier 1)
    ChIP-seq on H1-hESC (Tier1) cells
    H3K4me1
    Target
    H3K4me1
    Rene Maehr, UMMS
    4DNESDDOR7CD
    ChIP-seq
    H1-hESC (Tier 1)
    ChIP-seq on H1-hESC (Tier1) cells
    H3K27me3
    Target
    H3K27me3
    Rene Maehr, UMMS
    4DNES2PTM8JY
    ChIP-seq
    H1-hESC (Tier 1)
    ChIP-seq on H1-hESC (Tier1) cells
    H3K27ac
    Target
    H3K27ac
    Rene Maehr, UMMS
    4DNES4AABNEZ
    in situ Hi-C
    H1-hESC (Tier 1)
    Hi-C on H1 cells
    RNaseA
    Enzyme
    Arima - A1, A2
    Sheng Zhong, UCSD
    4DNES65I3RQG
    in situ Hi-C
    H1-hESC (Tier 1)
    Hi-C on H1 cells
    Flavopiridol
    Enzyme
    Arima - A1, A2
    Sheng Zhong, UCSD
    4DNES2253IBO
    in situ Hi-C
    H1-hESC (Tier 1)
    Hi-C on H1 cells
    Ammonium acetate
    Enzyme
    Arima - A1, A2
    Sheng Zhong, UCSD
    4DNESFSCP5L8
    in situ Hi-C
    H1-hESC (Tier 1)
    Hi-C on H1 cells
    No treatment control
    Enzyme
    Arima - A1, A2
    Sheng Zhong, UCSD
    4DNESOBRUQ12
    MARGI
    H1-hESC (Tier 1)
    iMARGI on H1 cells
    RNaseA
    Enzyme
    AluI
    Sheng Zhong, UCSD
    4DNES8B3R3P8
    MARGI
    H1-hESC (Tier 1)
    iMARGI on H1 cells
    Flavopiridol
    Enzyme
    AluI
    Sheng Zhong, UCSD
    4DNESGRI8A8N
    MARGI
    H1-hESC (Tier 1)
    iMARGI on H1 cells
    Ammonium acetate
    Enzyme
    AluI
    Sheng Zhong, UCSD
    4DNESNOJ7HY7
    MARGI
    H1-hESC (Tier 1)
    iMARGI on H1 cells
    No treatment control
    Enzyme
    AluI
    Sheng Zhong, UCSD
    4DNESIXALY6C
    DamID-seq
    H1-hESC (Tier 1)
    DamID-seq on H1-hESC cells (2020-07-01)
    Dam-only control
    Target
    None (Control)
    Bas van Steensel, NKI
    4DNESWSHTK3T
    DamID-seq
    H1-hESC (Tier 1)
    DamID-seq on H1-hESC cells (2020-07-01)
    Nucleolar Targeting Signal (4X-AP3)-Dam
    Target
    Nucleolus Localization Sequence (4X-AP3D1) (engineered reagent)
    Bas van Steensel, NKI
    4DNESX75DD7R
    in situ Hi-C
    H1-hESC (Tier 1)
    Hi-C on H1 cells - protocol variations
    Formaldehyde+DSG, DpnII, H1-hESC (Tier 1)
    Enzyme
    DpnII
    Job Dekker, UMMS