ExperimentSetReplicate

ExperimentSet4DNES8B3R3P8
released

iMARGI on human embryonic stem cells (H1) treated with flavopiridol - FL

   July 1st, 2021 at 5:48pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: AluI

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>200000)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNES8B3R3P8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIEWRPAGX
209.02m
9.115%
44.336%
46.549%
Experiment
4DNEXHOPXSVM
Bio Rep 1, Tec Rep 1
MARGI on H1-hESC (Tier 1)
File
Contact List-replicate (pairs)
4DNFI9OEYWLS
145.55m
10.734%
43.06%
46.205%
Experiment
4DNEXWUS9U4F
Bio Rep 2, Tec Rep 1
MARGI on H1-hESC (Tier 1)
File
Contact List-replicate (pairs)
4DNFI48EPL5E
63.46m
5.401%
47.261%
47.338%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES8B3R3P8
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIEQOA3TL
1000; 2000; 5000; 10000; 25000; 50000; 100000; 250000; 500000; 1000000; 2500000; 5000000; 10000000