ExperimentSet4DNESFSCP5L8
released
July 1st, 2021 at 5:48pm
Source Publication
Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells.
Calandrelli R, Wen X, et al., Nature communications 2023
Assay Description
Note: Superseding Item - 4DNESFSCP5L8
This experiment set supersedes 4DNESTCJSP7W because the replicate structure of the old set was determined to be incorrect as submitted. Experiments submitted as technical replicates were in fact biological replicates. A new biological replicate has been added to the superseding set and new sequencing replicates (i.e. new fastq files) have also been added to one of the superseded replicate experiments. Due to the change in replicate structure new accessions have been assigned for experiments and biosamples, however, accessions for unchanged files are shared between the new and replaced replicate sets..
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
stem cells
Sample
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Enzyme: Arima - A1, A2
10 Processed Files
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details