ExperimentSet4DNESTCJSP7W
replaced
November 27th, 2018 at 2:37am
Data Usage Guidelines
Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.
Assay Description
Note: Replaced Item - 4DNESTCJSP7W
This experiment set was replaced by 4DNESFSCP5L8 because the replicate structure of the old set was determined to be incorrect as submitted. Experiments submitted as technical replicates were in fact biological replicates. A new biological replicate has been added to the superseding set and new sequencing replicates (i.e. new fastq files) have also been added to one of the superseded replicate experiments. Due to the change in replicate structure new accessions have been assigned for experiments and biosamples, however, accessions for unchanged files are shared between the new and replaced replicate sets..
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
stem cells
Sample
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Enzyme: AluI
8 Processed Files
Experiment
File
File Type
File Size
Notes
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>200000)
Short cis reads
Trans Reads
Details
Experiment
For File
Failed Balancing
Details