Included Properties
Data Type
Project
Lab
Experiment Category
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
Status
Commendations
Warnings
1 Common Properties
Set Type
Replicate
2422 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
IMR-90
Genome-scale imaging in IMR90 cells
DNA-MERFISH of 1041 genomic loci (alpha-amanitin treated)
Target
Chromosomes, region
multiplexed FISH
IMR-90
Genome-scale imaging in IMR90 cells
DNA-MERFISH + RNA-MERFISH of 1137 genes
Target
Chromosomes, transcript, region
multiplexed FISH
IMR-90
Genome-scale imaging in IMR90 cells
DNA-MERFISH of 1041 genomic loci
Target
Chromosomes, region
in situ ChIA-PET
GM12878
in situ ChIA-PET in GM12878 cell line
RNAPII antibody
Target
RNA Pol II
in situ ChIA-PET
GM12878
in situ ChIA-PET in GM12878 cell line
CTCF antibody
Target
CTCF protein
multiplexed FISH
R1 mESC line
Multiplexed FISH in R1 mESCs
Non-Targeting control
Target
40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
multiplexed FISH
R1 mESC line
Multiplexed FISH in R1 mESCs
7.5-kb USP Prdm8
Target
40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
multiplexed FISH
R1 mESC line
Multiplexed FISH in R1 mESCs
33-kb USF Fgf5
Target
40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
multiplexed FISH
whole fruit fly
Multiplexed FISH in Drosophila embryos
Nuclear cycle 14 (nc14) of developmental stage
Target
34 oligos in dpp locus (fruit fly), Chromosomes
multiplexed FISH
whole fruit fly
Multiplexed FISH in Drosophila embryos
Nuclear cycle 12 (nc12) of developmental stage
Target
34 oligos in dpp locus (fruit fly), Chromosomes
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S16
Fraction
P17 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S15
Fraction
P16 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S14
Fraction
P15 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S13
Fraction
P14 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S12
Fraction
P13 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S11
Fraction
P12 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S10
Fraction
P11 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S9
Fraction
P10 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S8
Fraction
P9 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S7
Fraction
P8 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S6
Fraction
P7 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S5
Fraction
P6 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S4
Fraction
P5 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S3
Fraction
P4 of 16 fractions
Multi-stage Repli-seq
F121-9-CASTx129 (Tier 2) differentiated to neural progenitor cell
16-fraction Repli-seq on NPC differentiated from F121-9 mouse ESC
S2
Fraction
P3 of 16 fractions