Search for ExperimentSetReplicate

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  • ExperimentSetReplicate85
    • Lab
    Experiment Type
  • FISH
  • RNA FISH85
    • Dataset
    Organism
    Sample Type
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Publication
    Modifications
    Treatments
    Assay Details
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    Status
  • Released85
    • Warnings
    5 Common Properties
     Project
    4DN
     Experiment Category
    Microscopy
     Sample Tier
    Unclassified
     Set Type
    Replicate
     Commendations
    No value
    85 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESMT2POJ8
    RNA FISH
    ES-E14TG2a with Rad21-AID
    RNA FISH in mESC with CTCF and cohesin depletion
    mESC RAD21-AID + DMSO
    Target
    12 mRNA (mouse)
    Alistair Boettiger, STANFORD
    4DNESFTOIYYY
    RNA FISH
    ES-E14TG2a with Rad21-AID
    RNA FISH in mESC with CTCF and cohesin depletion
    mESC RAD21-AID + auxin
    Target
    12 mRNA (mouse)
    Alistair Boettiger, STANFORD
    4DNES86HQ3Z2
    RNA FISH
    ES-E14TG2a with Rad21-AID
    RNA FISH in mESC with CTCF and cohesin depletion
    mESC RAD21-AID untreated
    Target
    12 mRNA (mouse)
    Alistair Boettiger, STANFORD
    4DNES116TCGO
    RNA FISH
    ES-E14TG2a with CTCF-AID
    RNA FISH in mESC with CTCF and cohesin depletion
    mESC CTCF-AID + DMSO
    Target
    12 mRNA (mouse)
    Alistair Boettiger, STANFORD
    4DNESNOYW1J9
    RNA FISH
    ES-E14TG2a with CTCF-AID
    RNA FISH in mESC with CTCF and cohesin depletion
    mESC CTCF-AID + auxin
    Target
    12 mRNA (mouse)
    Alistair Boettiger, STANFORD
    4DNES2TA9F1Y
    RNA FISH
    ES-E14TG2a with CTCF-AID
    RNA FISH in mESC with CTCF and cohesin depletion
    mESC CTCF-AID untreated
    Target
    12 mRNA (mouse)
    Alistair Boettiger, STANFORD
    4DNESOEZ288R
    RNA FISH
    ES-E14TG2a
    RNA FISH in mESC with CTCF and cohesin depletion
    mESC + DMSO
    Target
    12 mRNA (mouse)
    Alistair Boettiger, STANFORD
    4DNESGJ2WNZD
    RNA FISH
    ES-E14TG2a
    RNA FISH in mESC with CTCF and cohesin depletion
    mESC untreated
    Target
    12 mRNA (mouse)
    Alistair Boettiger, STANFORD
    4DNESAN7TNP6
    RNA FISH
    U2OS
    RNA FISH for TERRA in U2OS
    dCas13-Suntag-sfGFP
    Target
    Chromosomes, TERRA
    Huaiying Zhang, CMU
    4DNESYARPKQ5
    RNA FISH
    U2OS
    RNA FISH for TERRA in U2OS
    dCas13-EGFP
    Target
    Chromosomes, TERRA
    Huaiying Zhang, CMU
    4DNESCVS2BTV
    RNA FISH
    Fruit fly (Oregon-R) embryo - NC13
    Dual color smFISH on fruit fly embryo (nuclear cycle 13)
    Target: wt hunchback mRNA alternating control
    Target
    Chromosomes, hunchback mRNA (fruit fly)
    Thomas Gregor, PRINCETON
    4DNES7UTO2B6
    RNA FISH
    Fruit fly embryo hunchback +/- (NC13)
    Dual color smFISH on fruit fly embryo (nuclear cycle 13)
    Target: wt hunchback mRNA single gene copy
    Target
    8' region of hunchback mRNA (fruit fly), Chromosomes
    Thomas Gregor, PRINCETON
    4DNESWVN3T3F
    RNA FISH
    Fruit fly (Oregon-R) embryo - NC13
    Dual color smFISH on fruit fly embryo (nuclear cycle 13)
    Target: wt giant mRNA
    Target
    8' region of giant mRNA (fruit fly), Chromosomes
    Thomas Gregor, PRINCETON
    4DNESA46FCOI
    RNA FISH
    Fruit fly (Oregon-R) embryo - NC13
    Dual color smFISH on fruit fly embryo (nuclear cycle 13)
    Target: wt knirps mRNA
    Target
    8' region of knirps mRNA (fruit fly), Chromosomes
    Thomas Gregor, PRINCETON
    4DNES79RMWNZ
    RNA FISH
    Fruit fly (Oregon-R) embryo - NC13
    Dual color smFISH on fruit fly embryo (nuclear cycle 13)
    Target: wt kruppel mRNA
    Target
    8' region of knuppel mRNA (fruit fly), Chromosomes
    Thomas Gregor, PRINCETON
    4DNES6MUQJPB
    RNA FISH
    Fruit fly (Oregon-R) embryo - NC13
    Dual color smFISH on fruit fly embryo (nuclear cycle 13)
    Target: wt hunchback mRNA
    Target
    8' region of hunchback mRNA (fruit fly), Chromosomes
    Thomas Gregor, PRINCETON
    4DNESQOT94IR
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hnrnpl probe, +JQ1
    Target
    Chromosomes, GRCm38:7:28808541-28822266 mouse region
    Arjun Raj, UPENN
    4DNES4QTKJ16
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hnrnpl probe, control
    Target
    Chromosomes, GRCm38:7:28808541-28822266 mouse region
    Arjun Raj, UPENN
    4DNESPE5LZ1C
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    cdc34, slc4a1 probes, +JQ1
    Target
    Chromosomes, GRCm38:10:79682195-79688398 mouse region, GRCm38:11:102348820-102365281 mouse region
    Arjun Raj, UPENN
    4DNESE8JB6XE
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    cdc34, slc4a1 probes, control
    Target
    Chromosomes, GRCm38:10:79682195-79688398 mouse region, GRCm38:11:102348820-102365281 mouse region
    Arjun Raj, UPENN
    4DNES2X7ULBN
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hbb-b1 probe, +JQ1
    Target
    Chromosomes, GRCm38:7:103826534-103827928 mouse region
    Arjun Raj, UPENN
    4DNESUPMDA2K
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hbb-b1 probe, control
    Target
    Chromosomes, GRCm38:7:103826534-103827928 mouse region
    Arjun Raj, UPENN
    4DNESS4DX5FS
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    slc25a37 probe, +JQ1
    Target
    Chromosomes, GRCm38:14:69241851-69285103 mouse region
    Arjun Raj, UPENN
    4DNESGLLM8PO
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    slc25a37 probe, control
    Target
    Chromosomes, GRCm38:14:69241851-69285103 mouse region
    Arjun Raj, UPENN
    4DNESK5CRXKT
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    zfpm1, pabpc1 probes, +JQ1
    Target
    Chromosomes, GRCm38:8:122282141-122337247 mouse region, GRCm38:15:36595658-36608973 mouse region
    Arjun Raj, UPENN