ExperimentSetReplicate

ExperimentSet4DNESNOYW1J9
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Multiplexed RNA FISH in mESC CTCF-AID + auxin

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: 12 mRNA (mouse)
Channel
Path
 
ch03
12 mRNA (mouse) targeted by oligo probe library, readout oligo library (with Alexa Fluor 750-labeled imaging oligos)
ch01
12 mRNA (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

1 Processed File

Experiment
File
File Type
File Size
Notes
Experiment
4DNEX9X7E1JZ
Bio Rep 1, Tec Rep 1
RNA FISH on ES-E14TG2a with CTCF-AID
File
4DNFI6RM688K
FOF-CT - RNA-spot (csv)
43.6 kB