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Included Properties

Data Type
  • ExperimentSetReplicate25
    • Project
    Lab
    Experiment Type
  • Hi-C
  • DNase Hi-C25
    • Dataset
    Organism
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Publication
    Modifications
    Treatments
    Center
    Status
  • Released25
    • Warnings
    4 Common Properties
     Experiment Category
    Sequencing
     Assay Details
    Enzyme: DNaseI
     Set Type
    Replicate
     Commendations
    No value
    25 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES2D4WOKP
    DNase Hi-C
    RUES2 differentiated to endothelial cell
    DNase Hi-C on human iPSCs differentiated to endothelium
    endothelial cell - day 14
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNES6MT2D6K
    DNase Hi-C
    RUES2 differentiated to endothelial progenitor cell
    DNase Hi-C on human iPSCs differentiated to endothelium
    endothelial progenitor - day 6
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNESX5HHBRP
    DNase Hi-C
    RUES2 differentiated to mesoderm
    DNase Hi-C on human iPSCs differentiated to endothelium
    mesoderm - day 2
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNES8R5RDVD
    DNase Hi-C
    RUES2
    DNase Hi-C on human iPSCs differentiated to endothelium
    undifferentiated - day 0
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNESXNK2AP5
    DNase Hi-C
    LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
    Hi-C on lamin A/C haploinsufficient hiPSC-derived cardiomyocytes
    CRISPR corrected LMNA het R225X mutation to R225R - Clone 38
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNESFFI9FWZ
    DNase Hi-C
    LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
    Hi-C on lamin A/C haploinsufficient hiPSC-derived cardiomyocytes
    CRISPR corrected LMNA het R225X mutation to R225R - Clone 15
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNESTZWFM9F
    DNase Hi-C
    LMNA-R225X-het
    Hi-C on lamin A/C haploinsufficient hiPSC-derived cardiomyocytes
    Heterozygous LMNA nonsense mutation R225X
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNESIQ6IPCO
    DNase Hi-C
    WTC-11 (Tier 1)
    Hi-C on WTC-11 differentiation to cardiomyocytes
    cardiomyocytes
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNESVW165TO
    DNase Hi-C
    WTC-11 (Tier 1)
    Hi-C on WTC-11 differentiation to cardiomyocytes
    cardiac progenitors
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNES8BLXVP5
    DNase Hi-C
    WTC-11 (Tier 1)
    Hi-C on WTC-11 differentiation to cardiomyocytes
    mesoderm
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNESLOL2OR2
    DNase Hi-C
    WTC-11 (Tier 1)
    Hi-C on WTC-11 differentiation to cardiomyocytes
    undifferentiated
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNES5OZGN2L
    DNase Hi-C
    HeLa-S3
    DNase Hi-C in Hela-S3 cells +/- SF3B1 siRNA
    treated with SF3B1 siRNA
    Enzyme
    DNaseI
    Todd Waldman, GEORGETOWN
    4DNESGEEV6TJ
    DNase Hi-C
    HeLa-S3
    DNase Hi-C in Hela-S3 cells +/- SF3B1 siRNA
    treated with control scrambled siRNA
    Enzyme
    DNaseI
    Todd Waldman, GEORGETOWN
    4DNESRWDFFF8
    DNase Hi-C
    brain
    DNase Hi-C on tissues
    brain
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNESWWRKZDK
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    Crispr deletion of 37 kb including Ds-TR gene
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNESAGFJ56V
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    Crispr generated inversion of CTCF site in GRCm38:X:75674046-75674952
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNES49IRGRY
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    Crispr inversion of 44 kb including Dxz4 gene
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNESNPYVXDM
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    Crispr deletion of 44 kb including Dxz4 gene
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNESF8PGGTI
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    Crispr deletion of 127 kb 'hinge' region near Dxz4 gene
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNESG15UT75
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    WT
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNESZFHB53P
    DNase Hi-C
    heart
    DNase Hi-C on tissues
    heart
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNESGTHHJAC
    DNase Hi-C
    RUES2
    DNAse Hi-C on RUES cell differentiation to cardiomyocytes
    cardiomyocytes
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNES6G787KF
    DNase Hi-C
    RUES2
    DNAse Hi-C on RUES cell differentiation to cardiomyocytes
    cardiac progenitors
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNESSU7RRNR
    DNase Hi-C
    RUES2
    DNAse Hi-C on RUES cell differentiation to cardiomyocytes
    mesoderm
    Enzyme
    DNaseI
    Chuck Murry, UW
    4DNESW72J62T
    DNase Hi-C
    RUES2
    DNAse Hi-C on RUES cell differentiation to cardiomyocytes
    undifferentiated
    Enzyme
    DNaseI
    Chuck Murry, UW
    - fin -