ExperimentSetReplicate

ExperimentSet4DNES5OZGN2L
released

Replicates of in situ DNase Hi-C on HeLa cells transfected with SF3B1 siRNA

   October 16th, 2018 at 10:35pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
RNAi
Assay Details 
Enzyme: DNaseI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES5OZGN2L
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIRHCPFJ9
227.86m
5.155%
86.855%
7.989%
Experiment
4DNEXBXZVFAN
Bio Rep 1, Tec Rep 1
DNase Hi-C on HeLa-S3 with DNaseI
File
Contact List-replicate (pairs)
4DNFIHSEIO32
106.21m
5.423%
86.703%
7.874%
Experiment
4DNEX7TC67QU
Bio Rep 2, Tec Rep 1
DNase Hi-C on HeLa-S3 with DNaseI
File
Contact List-replicate (pairs)
4DNFIL87S5VW
121.65m
4.922%
86.988%
8.09%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES5OZGN2L
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIJ2YW2HC
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXBXZVFAN
Bio Rep 1, Tec Rep 1
DNase Hi-C on HeLa-S3 with DNaseI
File
Alignments (bam)
4DNFI9I19W5J
155.79m
7.061%
13.25%
10.232%
1.279%
0.154%
Experiment
4DNEX7TC67QU
Bio Rep 2, Tec Rep 1
DNase Hi-C on HeLa-S3 with DNaseI
File
Alignments (bam)
4DNFI1IICAFP
186.59m
6.761%
13.054%
13.777%
1.213%
0.155%