ExperimentSetReplicate

ExperimentSet4DNES2D4WOKP
released
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DNase Hi-C on RUES2 iPSC cells - differentiation day 14 endothelial cells

   September 19th, 2022 at 4:03pm
Source Publication
Dynamic chromatin organization and regulatory interactions in human endothelial cell differentiation.
Alavattam KG, Mitzelfelt KA, et al., Stem cell reports 2022

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
RUES2 differentiated to endothelial cell
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES2D4WOKP
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPKTDXSP
219.69m
30.088%
49.508%
20.404%
Experiment
4DNEXCJ14SGJ
Bio Rep 1, Tec Rep 1
DNase Hi-C on RUES2 differentiated to endothelial cell with DNaseI
File
Contact List-replicate (pairs)
4DNFI9DDJXER
107.48m
31.957%
51.517%
16.526%
Experiment
4DNEXT2XYQBB
Bio Rep 2, Tec Rep 1
DNase Hi-C on RUES2 differentiated to endothelial cell with DNaseI
File
Contact List-replicate (pairs)
4DNFIMKBHA9W
112.21m
28.297%
47.584%
24.119%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES2D4WOKP
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIAGGRHEX
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXCJ14SGJ
Bio Rep 1, Tec Rep 1
DNase Hi-C on RUES2 differentiated to endothelial cell with DNaseI
File
Alignments (bam)
4DNFINSWVVOK
172.15m
13.862%
14.593%
4.103%
5.005%
0.23%
Experiment
4DNEXT2XYQBB
Bio Rep 2, Tec Rep 1
DNase Hi-C on RUES2 differentiated to endothelial cell with DNaseI
File
Alignments (bam)
4DNFIJ2USFOL
182.64m
14.321%
13.855%
4.472%
5.917%
0.217%