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Included Properties

Data Type
  • ExperimentSetReplicate40
    • Project
    Lab
    Experiment Type
  • Enrichment Hi-C
  • Capture Hi-C40
    • Dataset
    Organism
    Sample Type
    Sample Category
    Sample
    Tissue Source
    Publication
    Modifications
    Treatments
    Assay Details
    Center
    Status
  • Released40
    • Warnings
    5 Common Properties
     Experiment Category
    Sequencing
     Sample Tier
    Unclassified
     Organ/System
    No value
     Set Type
    Replicate
     Commendations
    No value
    40 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES3PDMUHG
    Capture Hi-C
    7889SA3.5
    5C on 6Mb of chrX
    Control 30kb deletion
    Target
    6MB 5C enriched region
    Jennifer Cremins, UPENN
    4DNES39F1QWU
    Capture Hi-C
    7889SA3.5
    5C on 6Mb of chrX
    IZ boundary deletion
    Target
    6MB 5C enriched region
    Jennifer Cremins, UPENN
    4DNESLRDUPZ6
    Capture Hi-C
    7889SA3.5
    5C on 6Mb of chrX
    unedited cells
    Target
    6MB 5C enriched region
    Jennifer Cremins, UPENN
    4DNESI6KY1VF
    Capture Hi-C
    G1E-ER4 with commd3 CTCF site deletion, mCherry-MD
    Capture-C on sync. commd3- G1E-ER4
    mid-G1
    Target
    GRCm38:2:18672514-18673054 mouse region
    Gerd Blobel, CHOP
    4DNES2P37K7K
    Capture Hi-C
    G1E-ER4 with commd3 CTCF site deletion, mCherry-MD
    Capture-C on sync. commd3- G1E-ER4
    early G1
    Target
    GRCm38:2:18672514-18673054 mouse region
    Gerd Blobel, CHOP
    4DNESNQNNTDM
    Capture Hi-C
    G1E-ER4 with commd3 CTCF site deletion, mCherry-MD
    Capture-C on sync. commd3- G1E-ER4
    anaphase/telophase
    Target
    GRCm38:2:18672514-18673054 mouse region
    Gerd Blobel, CHOP
    4DNESXAK169L
    Capture Hi-C
    G1E-ER4 with commd3 CTCF site deletion, mCherry-MD
    Capture-C on sync. commd3- G1E-ER4
    prometaphase
    Target
    GRCm38:2:18672514-18673054 mouse region
    Gerd Blobel, CHOP
    4DNESSDAAS6D
    Capture Hi-C
    G1E-ER4 with mCherry-MD
    Capture-C on sync. G1E-ER4
    mid-G1
    Target
    GRCm38:14:26669326-26669570 mouse region, GRCm38:16:93830868-93831393 mouse region, GRCm38:1:50962112-50962982 mouse region, GRCm38:2:167684388-167685405 mouse region, GRCm38:2:18672514-18673054 mouse region
    Gerd Blobel, CHOP
    4DNESP54RGT7
    Capture Hi-C
    G1E-ER4 with mCherry-MD
    Capture-C on sync. G1E-ER4
    early G1
    Target
    GRCm38:14:26669326-26669570 mouse region, GRCm38:16:93830868-93831393 mouse region, GRCm38:1:50962112-50962982 mouse region, GRCm38:2:167684388-167685405 mouse region, GRCm38:2:18672514-18673054 mouse region
    Gerd Blobel, CHOP
    4DNES853WOFN
    Capture Hi-C
    G1E-ER4 with mCherry-MD
    Capture-C on sync. G1E-ER4
    anaphase/telophase
    Target
    GRCm38:14:26669326-26669570 mouse region, GRCm38:16:93830868-93831393 mouse region, GRCm38:1:50962112-50962982 mouse region, GRCm38:2:167684388-167685405 mouse region, GRCm38:2:18672514-18673054 mouse region
    Gerd Blobel, CHOP
    4DNESU5FZUIT
    Capture Hi-C
    G1E-ER4 with mCherry-MD
    Capture-C on sync. G1E-ER4
    prometaphase
    Target
    GRCm38:14:26669326-26669570 mouse region, GRCm38:16:93830868-93831393 mouse region, GRCm38:1:50962112-50962982 mouse region, GRCm38:2:167684388-167685405 mouse region, GRCm38:2:18672514-18673054 mouse region
    Gerd Blobel, CHOP
    4DNES7BN9OCB
    Capture Hi-C
    F121-6-CASTx129
    -
    -
    Enzyme
    HindIII
    David Gilbert, SDBRI
    4DNESTZUCQH5
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNES8TLFCMQ
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNESQ9YYPQZ
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNES917ZVA6
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNESWPMRBIZ
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNESNI4PPYX
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNESAVVP47G
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNES2ZDGCY5
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNESA2R77LP
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNESVGV5YDR
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNES4A1BNPI
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNESR1UBP9L
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM
    4DNESNOJ28YT
    Capture Hi-C
    HAP-1
    -
    -
    Target
    GRCh38:1:179830865-181830865 region, GRCh38:5:30999893-32999894 region, GRCh38:8:131987753-133987757 region
    Erez Lieberman Aiden, BCM