ExperimentSetReplicate

ExperimentSet4DNES39F1QWU
released

Replicates of 5C on iPS cells with 80 kb Crispr deletion of loop anchor

   January 19th, 2021 at 8:49pm
Source Publication

Note - linked raw fastq files contain short enriched reads  


Care should be taken when using the FastQ files linked to this Experiment Set. The library was prepared from sequences enriched for a particular region of the genome using an 5C (Capture Hi-C) protocol. Alignment should be performed with an index generated from the oligonucleotides used for enrichment - available as a reference file linked the experiments in this set. Because the reads are short and contain adapter sequences alignment using a whole genome index will fail.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
induced pluripotent stem cell
Biosource 
7889SA3.5
Experiment Type(s) 
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: 6MB 5C enriched region

2 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Notes
Biosample
4DNBSGDOOBM2
Bio Replicate 1
Experiment
4DNEXJP6CXYD
Tech Replicate 1
Pair
277.58 MB
35-37
  Pass
18.01m
284.21 MB
35-37
  Pass
18.01m