Replicates of 5C on iPS cells with 30 kb control Crispr deletion
Note - linked raw fastq files contain short enriched reads
Care should be taken when using the FastQ files linked to this Experiment Set. The library was prepared from sequences enriched for a particular region of the genome using an 5C (Capture Hi-C) protocol. Alignment should be performed with an index generated from the oligonucleotides used for enrichment - available as a reference file linked the experiments in this set. Because the reads are short and contain adapter sequences alignment using a whole genome index will fail.