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  • ExperimentSetReplicate29
    • Lab
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  • Open Chromatin
  • ATAC-seq29
    • Dataset
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  • Released29
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    5 Common Properties
     Project
    4DN
     Experiment Category
    Sequencing
     Assay Details
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    Replicate
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    29 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESL9NS1I9
    ATAC-seq
    KH2 ESC differentiated to stem cell
    ATAC-seq on mouse stem cells
    Epiblast stem cells (EPISC)
    -
    Effie Apostolou, CORNELL
    4DNESAYAR38K
    ATAC-seq
    extraembryonic cell
    ATAC-seq on mouse stem cells
    Extra embryonic stem cells (XEN)
    -
    Effie Apostolou, CORNELL
    4DNESSLLU2AB
    ATAC-seq
    trophoblast cell
    ATAC-seq on mouse stem cells
    Trophoblast stem cells (TSC)
    -
    Effie Apostolou, CORNELL
    4DNESQIDKLL7
    ATAC-seq
    mouse embryonic stem cell
    ATAC-seq on mouse stem cells
    Embryonic stem cell (ESC) - new
    -
    Effie Apostolou, CORNELL
    4DNES5XEOXBC
    ATAC-seq
    mouse embryonic stem cell
    ATAC-seq on mouse stem cells
    Embryonic stem cell (ESC) - AD
    -
    Effie Apostolou, CORNELL
    4DNES694VKB2
    ATAC-seq
    HEK293 (Tier 2)
    ATAC-Seq on HEK293 cells after multi-target Crispr
    no treatment control
    -
    Taekjip Ha, JHU
    4DNES8M2U3VI
    ATAC-seq
    HEK293 (Tier 2)
    ATAC-Seq on HEK293 cells after multi-target Crispr
    photocleavable mgRNA - 4 h post light
    -
    Taekjip Ha, JHU
    4DNESTUP8TBC
    ATAC-seq
    HEK293 (Tier 2)
    ATAC-Seq on HEK293 cells after multi-target Crispr
    photocleavable mgRNA - 2 h post light
    -
    Taekjip Ha, JHU
    4DNESRIVHLUJ
    ATAC-seq
    HEK293 (Tier 2)
    ATAC-Seq on HEK293 cells after multi-target Crispr
    photocleavable mgRNA - 1 h post light
    -
    Taekjip Ha, JHU
    4DNESW8HXWB8
    ATAC-seq
    HEK293 (Tier 2)
    ATAC-Seq on HEK293 cells after multi-target Crispr
    photocleavable mgRNA - no light control
    -
    Taekjip Ha, JHU
    4DNES1ZCV8UF
    ATAC-seq
    HEK293 (Tier 2)
    ATAC-Seq on HEK293 cells after multi-target Crispr
    light activated caged mgRNA - 30 minute post light
    -
    Taekjip Ha, JHU
    4DNES2UW9H6A
    ATAC-seq
    HEK293 (Tier 2)
    ATAC-Seq on HEK293 cells after multi-target Crispr
    light activated caged mgRNA - 10 minute post light
    -
    Taekjip Ha, JHU
    4DNESX412YIY
    ATAC-seq
    HEK293 (Tier 2)
    ATAC-Seq on HEK293 cells after multi-target Crispr
    light activated caged mgRNA - no light control
    -
    Taekjip Ha, JHU
    4DNESPXW2DOY
    ATAC-seq
    HEK293 (Tier 2)
    ATAC-Seq on HEK293 cells after multi-target Crispr
    regular AluGG mgRNA - 3h
    -
    Taekjip Ha, JHU
    4DNESP3EU9LM
    ATAC-seq
    H1-hESC (Tier 1) differentiated to definitive endoderm
    ATAC-seq on H1 Definitive Endoderm (Tier 1) cells
    Definitive Endoderm
    -
    Rene Maehr, UMMS
    4DNESRQCT3SG
    ATAC-seq
    F121-9-CASTx129 (Tier 2) differentiated to epiblast cell
    ATAC-seq time course of EpiLC differentiation
    48 h
    -
    Karen Adelman, HARVARD
    4DNESEF1PANH
    ATAC-seq
    F121-9-CASTx129 (Tier 2) differentiated to epiblast cell
    ATAC-seq time course of EpiLC differentiation
    24 h
    -
    Karen Adelman, HARVARD
    4DNESXQALDXD
    ATAC-seq
    F121-9-CASTx129 (Tier 2)
    ATAC-seq time course of EpiLC differentiation
    0 h
    -
    Karen Adelman, HARVARD
    4DNESQZYEJ8N
    ATAC-seq
    F121-6-CASTx129
    -
    -
    -
    David Gilbert, SDBRI
    4DNESMBA9T3L
    ATAC-seq
    HFFc6 (Tier 1)
    ATAC-seq on HFFc6 (Tier 1)
    -
    -
    Job Dekker, UMMS
    4DNESJX5TSX7
    ATAC-seq
    Patski
    -
    -
    -
    Christine Disteche, UW
    4DNESD3Q8OZ2
    ATAC-seq
    Patski
    -
    -
    -
    Christine Disteche, UW
    4DNESW7PWWH8
    ATAC-seq
    Patski
    -
    -
    -
    Christine Disteche, UW
    4DNESWI45DYJ
    ATAC-seq
    Patski
    -
    -
    -
    Christine Disteche, UW
    4DNESDG4HNP9
    ATAC-seq
    RUES2
    RUES cell differentiation to cardiomyocytes
    cardiomyocytes
    -
    Chuck Murry, UW