ExperimentSetReplicate

ExperimentSet4DNESDQYGIE6
released
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ATAC-seq on Cortical Interneurons NeuN+SATB2-BCL11B+TLE4- from donor UCSF2018-001

   March 3rd, 2025 at 4:46pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
prefrontal cortex inhibitory interneuron
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXY24VS3I
Bio Rep 1, Tec Rep 1
ATAC-seq on prefrontal cortex inhibitory interneuron
File
Read Positions (bed)
4DNFIEWY1JL7
6.12%
0.83
0.83
38.46m
Experiment
4DNEXQIYW2HE
Bio Rep 2, Tec Rep 1
ATAC-seq on prefrontal cortex inhibitory interneuron
File
Read Positions (bed)
4DNFIDXX7Q1E
3.16%
0.88
0.88
68.91m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESDQYGIE6
Multiple Experiments
File
Peaks (bigbed)
4DNFI31XRM2L
101.12k
1.19
1.28
0.06