ExperimentSetReplicate

ExperimentSet4DNEST2VRIDS
released
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ATAC-seq on Cortical Excitatory neurons NeuN+SATB2+BCL11B- from donor NIH-1501

   March 3rd, 2025 at 4:46pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
BA9 excitatory neuron
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

4 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXXT42VEA
Bio Rep 1, Tec Rep 1
ATAC-seq on BA9 excitatory neuron
File
Read Positions (bed)
4DNFIW7XGBYJ
13.75%
0.91
0.91
46.84m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNEST2VRIDS
Multiple Experiments
File
Peaks (bigbed)
4DNFIRSXF5OO
99.65k
0.0
1.0
0.06