Search for ExperimentSetReplicate

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  • ExperimentSetReplicate25
    • Dataset
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Publication
    Treatments
    Assay Details
    crosslinking_method
  • 1% Formaldehyde and 3mM DSG25
    • Produced in Publication
  • Akgol Oksuz B et al. (2021) PMID:3448015125
    • Commendations
    Warnings
    9 Common Properties
     Project
    4DN
     Lab
    Job Dekker, UMMS
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Modifications
    No value
     Center
    NOFIC - Dekker
     Set Type
    Replicate
     Status
    Released
    25 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES9X112GZ
    Micro-C
    HFF-hTERT
    Micro-C on HFF cells - protocol variations
    Formaldehyde+DSG
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESHQDSZZK
    in situ Hi-C
    HFF-hTERT
    Hi-C on HFF cells - protocol variations
    Formaldehyde+DSG, HindIII
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESUF2DBH1
    in situ Hi-C
    HFF-hTERT
    Hi-C on HFF cells - protocol variations
    Formaldehyde+DSG, DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESDBUUEL9
    in situ Hi-C
    HFF-hTERT
    Hi-C on HFF cells - protocol variations
    Formaldehyde+DSG, DdeI
    Enzyme
    DdeI
    Job Dekker, UMMS
    4DNESCXWBAEE
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+DSG, non synchronized
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNES61ZK6S8
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, HindIII, non synchronized
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESOS3TILT
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, DpnII, non synchronized
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESRTUDA91
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+DSG, mitosis
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESH5M9J3U
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, HindIII, mitosis
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESCWSXLYD
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, DpnII, mitosis
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESGCCOT7T
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+DSG, G1 phase
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESNRILSOK
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, HindIII, G1 phase
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESCMQDOWS
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, DpnII, G1 phase
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESEVQ1V15
    Micro-C
    H1-hESC
    Micro-C on H1 cells - protocol variations
    Formaldehyde+DSG
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNES5WCKFXE
    in situ Hi-C
    H1-hESC
    Hi-C on H1 cells - protocol variations
    Formaldehyde+DSG, HindIII
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES6ZLUF2N
    in situ Hi-C
    H1-hESC
    Hi-C on H1 cells - protocol variations
    Formaldehyde+DSG, DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESTJD2Z2P
    in situ Hi-C
    H1-hESC
    Hi-C on H1 cells - protocol variations
    Formaldehyde+DSG, DdeI
    Enzyme
    DdeI
    Job Dekker, UMMS
    4DNESP4MARXG
    Micro-C
    H1-hESC differentiated to definitive endoderm
    Micro-C on H1-DE cells - protocol variations
    Formaldehyde+DSG
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESTXE7D88
    in situ Hi-C
    H1-hESC differentiated to definitive endoderm
    Hi-C on H1-DE cells - protocol variations
    Formaldehyde+DSG, HindIII
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES4MY14SY
    in situ Hi-C
    H1-hESC differentiated to definitive endoderm
    Hi-C on H1-DE cells - protocol variations
    Formaldehyde+DSG, DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESLYL1IOJ
    in situ Hi-C
    H1-hESC differentiated to definitive endoderm
    Hi-C on H1-DE cells - protocol variations
    Formaldehyde+DSG, DdeI
    Enzyme
    DdeI
    Job Dekker, UMMS
    4DNESNMAAN97
    in situ Hi-C
    HFFc6 (Tier 1)
    Hi-C on HFF cells - protocol variations
    Formaldehyde+DSG, DpnII, HFFc6 (Tier 1)
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESN49VY8X
    in situ Hi-C
    HFFc6 (Tier 1)
    Hi-C on HFF cells - protocol variations
    Formaldehyde+DSG, DdeI and DpnII, HFFc6 (Tier 1)
    Enzyme
    DdeI and DpnII
    Job Dekker, UMMS
    4DNESH5YI3CM
    in situ Hi-C
    HFFc6 (Tier 1)
    Hi-C on HFF cells - protocol variations
    Formaldehyde+DSG, DdeI, HFFc6, (Tier 1)
    Enzyme
    DdeI
    Job Dekker, UMMS
    4DNESX75DD7R
    in situ Hi-C
    H1-hESC (Tier 1)
    Hi-C on H1 cells - protocol variations
    Formaldehyde+DSG, DpnII, H1-hESC (Tier 1)
    Enzyme
    DpnII
    Job Dekker, UMMS
    - fin -