ExperimentSetReplicate

ExperimentSet4DNES5WCKFXE
released

In situ Hi-C with HindIII on H1 embryonic stem cells from Maehr lab with 1% Formaldehyde and 3mM DSG crosslinking

   June 27th, 2020 at 6:56pm
Source Publication
Systematic evaluation of chromosome conformation capture assays.
Akgol Oksuz B, Yang L, et al., Nature methods 2021

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES5WCKFXE
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIUTE4F4B
234.79m
41.61%
26.541%
31.849%
Experiment
4DNEXSZZEHXT
Bio Rep 1, Tec Rep 1
in situ Hi-C on H1-hESC with HindIII
File
Contact List-replicate (pairs)
4DNFIDRXXWA7
234.79m
41.61%
26.541%
31.849%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES5WCKFXE
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIXGIJGA5
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXSZZEHXT
Bio Rep 1, Tec Rep 1
in situ Hi-C on H1-hESC with HindIII
File
Alignments (bam)
4DNFIHUJMB6I
381.91m
14.886%
13.018%
10.609%
0.009%
0.084%