ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNESNOJ7HY7
released

iMARGI on human embryonic stem cells (H1) - Control

   July 1st, 2021 at 5:48pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: AluI

14 Processed Files

Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNESNOJ7HY7
Multiple Experiments
contact list-combined (pairs)
8.23 GB
-
contact matrix (mcool)
2.18 GB
Experiment
4DNEXD9E1MAB
Bio Rep 1, Tec Rep 1
MARGI on H1-hESC (Tier 1)
alignments (bam)
159.54 GB
-
contact list-replicate (pairs)
4.89 GB
-
Experiment
4DNEX8RSKE62
Bio Rep 2, Tec Rep 1
MARGI on H1-hESC (Tier 1)
alignments (bam)
59.5 GB
-
contact list-replicate (pairs)
1006.18 MB
-
Experiment
4DNEXY653ER4
Bio Rep 3, Tec Rep 1
MARGI on H1-hESC (Tier 1)
alignments (bam)
60.42 GB
-
contact list-replicate (pairs)
1.11 GB
-
Experiment
4DNEXW3XINA3
Bio Rep 4, Tec Rep 1
MARGI on H1-hESC (Tier 1)
alignments (bam)
62.7 GB
-
contact list-replicate (pairs)
652.05 MB
-
alignments (bam)
66.08 GB
-
contact list-replicate (pairs)
1.16 GB
-
alignments (bam)
65.22 GB
-
contact list-replicate (pairs)
1.16 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>200000)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESNOJ7HY7
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIGDJIRV3
285.58m
12.286%
28.744%
58.97%
Experiment
4DNEXD9E1MAB
Bio Rep 1, Tec Rep 1
MARGI on H1-hESC (Tier 1)
File
Contact List-replicate (pairs)
4DNFI4XXEOJ4
144.26m
10.865%
26.169%
62.966%
Experiment
4DNEX8RSKE62
Bio Rep 2, Tec Rep 1
MARGI on H1-hESC (Tier 1)
File
Contact List-replicate (pairs)
4DNFIZZLJKSX
27.2m
12.8%
26.348%
60.851%
Experiment
4DNEXY653ER4
Bio Rep 3, Tec Rep 1
MARGI on H1-hESC (Tier 1)
File
Contact List-replicate (pairs)
4DNFICWA1X9Z
31.27m
14.763%
30.736%
54.501%
Experiment
4DNEXW3XINA3
Bio Rep 4, Tec Rep 1
MARGI on H1-hESC (Tier 1)
File
Contact List-replicate (pairs)
4DNFIC9B8VE9
17.62m
11.223%
38.634%
50.143%
File
Contact List-replicate (pairs)
4DNFIYFA5ZNQ
32.54m
14.305%
31.846%
53.849%
File
Contact List-replicate (pairs)
4DNFI85ITZ22
32.68m
14.324%
31.777%
53.9%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESNOJ7HY7
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIKWK6NSD
1000; 2000; 5000; 10000; 25000; 50000; 100000; 250000; 500000; 1000000; 2500000; 5000000; 10000000