ExperimentSetReplicate

ExperimentSet4DNES5S9ND9I
released
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DNA-MERFISH to image 1041 genomic loci spread across covering 22 automosome and X chromosome in IMR90 cells

   October 17th, 2024 at 2:36pm
Source Publication
Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin.
Su JH, Zheng P, et al., Cell 2020

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
IMR-90
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, region
Channel
Imaging Rounds
Path
 
ch00
-
Chromosomes targeted by DAPI
ch01
1-50
DNA-MERFISH to detect 100-kb 1041 genomic loci covering 22 automosome and X chromosome by Alexa Flour 750-labeled imaging oligos
ch02
1-50
DNA-MERFISH to detect 100-kb 1041 genomic loci covering 22 automosome and X chromosome by Alexa Flour 647-labeled imaging oligos

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXZPNHB42
Bio Rep 1, Tec Rep 1
multiplexed FISH on IMR-90
File
4DNFIXOQ5D8G
FOF-CT - spot biological data (csv)
49.05 MB
File
4DNFIZ4TAGXZ
FOF-CT - DNA-spot/trace core (csv)
236.11 MB