ExperimentSetReplicate

ExperimentSet4DNES21D8SP8
released

MicroC Libraries from H1ESC cells from 2 biological replicates, FA and DSG cross-linked, MNase digestion

   February 19th, 2019 at 3:46pm
Source Publication
Ultrastructural Details of Mammalian Chromosome Architecture.
Krietenstein N, Abraham S, et al., Molecular cell 2020

Note: This Experiment Set Supersedes - 4DNES21D8SP8  


This experiment set supercedes 4DNESRCFT5AI because new biological replicates were added.

Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H1-hESC (Tier 1)
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MNase

21 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES21D8SP8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI1O6IL1Q
3.22 billion
28.371%
58.135%
13.494%
Experiment
4DNEXQMEU2O4
Bio Rep 1, Tec Rep 1
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFI8GM4EL9
496.89m
23.981%
66.035%
9.984%
Experiment
4DNEX24VTARO
Bio Rep 1, Tec Rep 2
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIMT4PHZ1
204m
24.243%
61.861%
13.896%
Experiment
4DNEX9JAVMKE
Bio Rep 1, Tec Rep 3
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIBMG8YA3
298.36m
33.487%
49.581%
16.932%
Experiment
4DNEXWHALJ1K
Bio Rep 1, Tec Rep 4
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFING6ZFDF
471.27m
22.332%
59.216%
18.452%
Experiment
4DNEXQQM6EMK
Bio Rep 2, Tec Rep 1
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIULY29IQ
226.41m
30.487%
52.665%
16.849%
Experiment
4DNEXACM6M51
Bio Rep 2, Tec Rep 2
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFI2YHYAJO
220.06m
31.012%
51.996%
16.993%
Experiment
4DNEX2WPDBN7
Bio Rep 2, Tec Rep 3
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIXP9MVBU
434.65m
31.297%
57.424%
11.278%
Experiment
4DNEXCL5AQ32
Bio Rep 2, Tec Rep 4
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFI89L17XY
448.6m
30.638%
57.98%
11.382%
Experiment
4DNEXJPSM64Q
Bio Rep 2, Tec Rep 5
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIIYUGYBU
420.25m
30.733%
58.912%
10.355%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQMEU2O4
Bio Rep 1, Tec Rep 1
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFID87ZI1F
791.95m
4.987%
19.072%
13.194%
0.004%
0.077%
Experiment
4DNEX24VTARO
Bio Rep 1, Tec Rep 2
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFIW8TZAXU
746.64m
5.193%
19.915%
47.563%
0.006%
0.033%
Experiment
4DNEX9JAVMKE
Bio Rep 1, Tec Rep 3
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFISY5EYYP
716.33m
4.364%
21.99%
31.986%
0.009%
0.054%
Experiment
4DNEXWHALJ1K
Bio Rep 1, Tec Rep 4
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFI47X94O6
802.37m
4.594%
20.022%
16.645%
0.004%
0.074%
Experiment
4DNEXQQM6EMK
Bio Rep 2, Tec Rep 1
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFIMOJMDMC
334.68m
6.751%
19.607%
5.988%
0.003%
0.078%
Experiment
4DNEXACM6M51
Bio Rep 2, Tec Rep 2
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFI5MYJT3U
327.61m
5.187%
20.251%
7.388%
0.004%
0.079%
Experiment
4DNEX2WPDBN7
Bio Rep 2, Tec Rep 3
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFI9IPV1P1
731.95m
3.432%
18.226%
18.955%
0.004%
0.056%
Experiment
4DNEXCL5AQ32
Bio Rep 2, Tec Rep 4
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFI5PXT1KG
707.83m
3.329%
18.593%
14.697%
0.004%
0.056%
Experiment
4DNEXJPSM64Q
Bio Rep 2, Tec Rep 5
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFI1L2ANL1
731.85m
3.479%
18.469%
20.624%
0.004%
0.049%