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Included Properties

Data Type
  • ExperimentSetReplicate21
    • Dataset
    Sample Type
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Assay Details
    Set Type
  • Replicate21
    • Produced in Publication
  • Patterson B et al. (2023) PMID:3754075421
    • Warnings
    12 Common Properties
     Project
    4DN
     Lab
    Siyuan Wang, YALE
     Experiment Category
    Microscopy
     Experiment Type
    FISH
     Organism
    Human
     Sample Tier
    Unclassified
     Publication
    Patterson B et al. (2023) PMID:37540754
     Modifications
    No value
     Treatments
    No value
     Center
    OFHHD - Schatz
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    1
    Biosample
    Dataset
    2
    Condition
    3
    Assay Details
    Lab
    4DNESKWEG12C
    multiplexed FISH
    H7-hESC
    Chromatin tracing of chrX in H7
    H7 day2 XIST negative chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE
    4DNESMRJ8L8M
    multiplexed FISH
    H7-hESC
    Chromatin tracing of chrX in H7
    H7 day2 XIST positive chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE
    4DNES7FJN2TU
    multiplexed FISH
    H7-hESC
    Chromatin tracing of chrX in H7
    H7 day4 XIST negative chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE
    4DNESA93WQSO
    multiplexed FISH
    H7-hESC
    Chromatin tracing of chrX in H7
    H7 day4 XIST positive chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE
    4DNESELH11OV
    multiplexed FISH
    H7-hESC
    Chromatin tracing of chrX in H7
    H7 day6 XIST negative chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE
    4DNESSFIJDGY
    multiplexed FISH
    H7-hESC
    Chromatin tracing of chrX in H7
    H7 day6 XIST positive chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE
    4DNES8DN67K9
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 4iLAF+tMEKi
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESYMNKD6G
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 5iLA
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESXANJGRL
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 5iLA ATRX, negative chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), ATRX
    Siyuan Wang, YALE
    4DNESL23Q1IG
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 5iLA ATRX, positive chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), ATRX
    Siyuan Wang, YALE
    4DNES9551WCX
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 5iLAF
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNES7BT3MHL
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 combined conditions, XIST negative chromosome
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE
    4DNESPADIUQ8
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 combined conditions, XIST positive chromosome
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE
    4DNESKP8EO7E
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 mTeSR1
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNES5ZXOL2B
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 4iLAF+tMEKi
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESCTENQBB
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 5iLA
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESWLIGBX4
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 5iLAF
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESQFTK11H
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 mTeSR1
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESA6RWUVI
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX in IMR90
    IMR90 5iLA
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESCJ8M34U
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX in IMR90
    IMR90 5iLAF
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESDSVRJBX
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX in IMR90
    IMR90 mTeSR1
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
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