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Properties

Assay Details
Warnings
16 Common Properties
 Project
4DN
 Lab
Arjun Raj, UPENN
 Experiment Category
Microscopy
 Experiment Type
RNA FISH
 Organism
Mouse
 Sample Type
stem cells
 Sample Tier
Unclassified
 Sample Category
Mouse stem cell
 Sample
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
 Organ/System
No value
 Tissue Source
stem cell
 Publication
Bartman CR et al. (2018) PMID:30554946
 Modifications
No value
 Treatments
Chemical
 Center
NT - Raj
 Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
hnrnpl probe, +JQ1
Target
Chromosomes, GRCm38:7:28808541-28822266 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
hnrnpl probe, control
Target
Chromosomes, GRCm38:7:28808541-28822266 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
cdc34, slc4a1 probes, +JQ1
Target
Chromosomes, GRCm38:10:79682195-79688398 mouse region, GRCm38:11:102348820-102365281 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
cdc34, slc4a1 probes, control
Target
Chromosomes, GRCm38:10:79682195-79688398 mouse region, GRCm38:11:102348820-102365281 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
hbb-b1 probe, +JQ1
Target
Chromosomes, GRCm38:7:103826534-103827928 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
hbb-b1 probe, control
Target
Chromosomes, GRCm38:7:103826534-103827928 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
slc25a37 probe, +JQ1
Target
Chromosomes, GRCm38:14:69241851-69285103 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
slc25a37 probe, control
Target
Chromosomes, GRCm38:14:69241851-69285103 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
zfpm1, pabpc1 probes, +JQ1
Target
Chromosomes, GRCm38:8:122282141-122337247 mouse region, GRCm38:15:36595658-36608973 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
zfpm1, pabpc1 probes, control
Target
Chromosomes, GRCm38:8:122282141-122337247 mouse region, GRCm38:15:36595658-36608973 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
prdx2 probe, +JQ1
Target
Chromosomes, GRCm38:8:84969622-84974811 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
prdx2 probe, control
Target
Chromosomes, GRCm38:8:84969622-84974811 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
hba-a1, klf1 probes, +JQ1
Target
Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84901928-84905295 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
hba-a1, klf1 probes, control
Target
Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84901928-84905295 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
hba-a1, prdx2, klf1 probes, +JQ1
Target
Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84969622-84974811 mouse region, GRCm38:8:84901928-84905295 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
hba-a1, prdx2, klf1 probes, control
Target
Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84969622-84974811 mouse region, GRCm38:8:84901928-84905295 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
hba-a1, prdx2 probes, +JQ1
Target
Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84969622-84974811 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
hba-a1, prdx2 probes, control
Target
Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84969622-84974811 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
zfpm1, slc25a37 probes, +JQ1
Target
Chromosomes, GRCm38:8:122282141-122337247 mouse region, GRCm38:14:69241851-69285103 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
zfpm1, slc25a37 probes, control
Target
Chromosomes, GRCm38:8:122282141-122337247 mouse region, GRCm38:14:69241851-69285103 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
klf1 probe, +JQ1
Target
Chromosomes, GRCm38:8:84901928-84905295 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
klf1 probe, control
Target
Chromosomes, GRCm38:8:84901928-84905295 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
pabpc1 probe, +JQ1
Target
Chromosomes, GRCm38:15:36595658-36608973 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
pabpc1 probe, control
Target
Chromosomes, GRCm38:15:36595658-36608973 mouse region
RNA FISH
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
nascent transcript RNA FISH - JQ1 treatment
tcf3, tal1 probes, +JQ1
Target
Chromosomes, GRCm38:10:80409165-80433653 mouse region, GRCm38:4:115056426-115071755 mouse region