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Data Type
  • ExperimentSetReplicate12
    • Dataset
  • nascent transcript RNA FISH +/- 13h GATA-1 induction12
    • Treatments
    Assay Details
    Set Type
  • Replicate12
    • Status
  • Released12
    • Warnings
    15 Common Properties
     Project
    4DN
     Lab
    Arjun Raj, UPENN
     Experiment Category
    Microscopy
     Experiment Type
    FISH
     Organism
    Mouse
     Sample Type
    stem cells
     Sample Tier
    Unclassified
     Sample Category
    Mouse stem cell
     Sample
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
     Organ/System
    No value
     Tissue Source
    stem cell
     Publication
    Bartman CR et al. (2018) PMID:30554946
     Modifications
    No value
     Center
    NT - Raj
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESMGC31F4
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    gata2 probe, differentiated
    Target
    Chromosomes, GRCm38:6:88193891-88207032 mouse region
    Arjun Raj, UPENN
    4DNESEV11V2B
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    gata2 probe, undifferentiated
    Target
    Chromosomes, GRCm38:6:88193891-88207032 mouse region
    Arjun Raj, UPENN
    4DNESUVLM4KF
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    myc probe, differentiated
    Target
    Chromosomes, GRCm38:15:61985341-61990361 mouse region
    Arjun Raj, UPENN
    4DNESTHLDIN4
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    myc probe, undifferentiated
    Target
    Chromosomes, GRCm38:15:61985341-61990361 mouse region
    Arjun Raj, UPENN
    4DNESXS2U33O
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    myc, kit, calr probes, differentiated
    Target
    Chromosomes, GRCm38:15:61985341-61990361 mouse region, GRCm38:5:75574987-75656722 mouse region, GRCm38:8:84842088-84846931 mouse region
    Arjun Raj, UPENN
    4DNES1RBNQB6
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    myc, kit, calr probes, undifferentiated
    Target
    Chromosomes, GRCm38:15:61985341-61990361 mouse region, GRCm38:5:75574987-75656722 mouse region, GRCm38:8:84842088-84846931 mouse region
    Arjun Raj, UPENN
    4DNESBVH64SG
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    kit, calr probes, differentiated
    Target
    Chromosomes, GRCm38:5:75574987-75656722 mouse region, GRCm38:8:84842088-84846931 mouse region
    Arjun Raj, UPENN
    4DNESNKZEXXO
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    kit, calr probes, undifferentiated
    Target
    Chromosomes, GRCm38:5:75574987-75656722 mouse region, GRCm38:8:84842088-84846931 mouse region
    Arjun Raj, UPENN
    4DNESZ6ZTSNN
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    prdx2, pabpc1 probes, differentiated
    Target
    Chromosomes, GRCm38:8:84969622-84974811 mouse region, GRCm38:15:36595658-36608973 mouse region
    Arjun Raj, UPENN
    4DNES8NBUERX
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    prdx2, pabpc1 probes, undifferentiated
    Target
    Chromosomes, GRCm38:8:84969622-84974811 mouse region, GRCm38:15:36595658-36608973 mouse region
    Arjun Raj, UPENN
    4DNESKW7ALKT
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    hbb-b1 probe, differentiated
    Target
    Chromosomes, GRCm38:7:103826534-103827928 mouse region
    Arjun Raj, UPENN
    4DNESVDCPSHH
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH +/- 13h GATA-1 induction
    hbb-b1 probe, undifferentiated
    Target
    Chromosomes, GRCm38:7:103826534-103827928 mouse region
    Arjun Raj, UPENN
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