359 fewer sets in 4DN-only Data.
Properties
Project
Lab
Experiment Category
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
Status
Commendations
Warnings
1 Common Properties
Validation Errors
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn non-boundary CTCF sites - input
Target
None (Control)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
15 syn non-boundary CTCF sites - input
Target
None (Control)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
15 syn non-boundary CTCF sites - anti-Rad21
Target
Rad21 mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn non-boundary CTCF sites - anti-Rad21
Target
Rad21 mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
15 syn non-boundary CTCF sites - anti-CTCF
Target
Ctcf mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn non-boundary CTCF sites - anti-CTCF
Target
Ctcf mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
4 CBS (4 CTCF binding site region between Sox2 and SE) - input
Target
None (Control)
ChIP-seq
F123-CASTx129 with Sox2 tags
ChIP-seq on tagged Sox2 cells
Control line - input
Target
None (Control)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
4 CBS (4 CTCF binding site region between Sox2 and SE) - anti-CTCF
Target
Ctcf mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
4 CBS (4 CTCF binding site region between Sox2 and SE) - anti-H3K4me3
Target
H3K4me3
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
4 CBS (4 CTCF binding site region between Sox2 and SE) - anti-H3K27ac
Target
H3K27ac (mouse)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
4 CBS (4 CTCF binding site region between Sox2 and SE) - anti-Rad21
Target
Rad21 mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags
ChIP-seq on tagged Sox2 cells
Control line - anti-CTCF
Target
Ctcf mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags
ChIP-seq on tagged Sox2 cells
Control line - anti-H3K27ac
Target
H3K27ac (mouse)
ChIP-seq
F123-CASTx129 with Sox2 tags
ChIP-seq on tagged Sox2 cells
Control line - anti-Rad21
Target
Rad21 mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags
ChIP-seq on tagged Sox2 cells
Control line - anti-H3K4me3
Target
H3K4me3
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn CTCF sites - input
Target
None (Control)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn CTCF sites - anti-CTCF
Target
Ctcf mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn CTCF sites - anti-Rad21
Target
Rad21 mouse protein
PLAC-seq
F123-CASTx129 with Sox2 tags and RMCE site downstream of Sox2 SE
H3K4me3 PLAC-seq on on Sox2 tagged F123 ES cells
4CBS Downstream Control - 4 CTCF binding site region after Sox2 and SE
Target
H3K4me3