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359 fewer sets in 4DN-only Data.
 

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1 Common Properties
 Validation Errors
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Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
5 min digestion
Enzyme
DpnII
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
60 min digestion
Enzyme
DpnII
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
120 min digestion
Enzyme
DpnII
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
180 min digestion
Enzyme
DpnII
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
240 min digestion
Enzyme
DpnII
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
960 min digestion
Enzyme
DpnII
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
15 min digestion
Enzyme
DpnII
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
30 min digestion
Enzyme
DpnII
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
45 min digestion
Enzyme
DpnII
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
75 min digestion
Enzyme
DpnII
RE-seq
K562 (Tier 2)
DpnII-seq on K562 cells
90 min digestion
Enzyme
DpnII
Capture Hi-C
7889SA3.5
5C on 6Mb of chrX
Control 30kb deletion
Target
6MB 5C enriched region
Capture Hi-C
7889SA3.5
5C on 6Mb of chrX
IZ boundary deletion
Target
6MB 5C enriched region
Capture Hi-C
7889SA3.5
5C on 6Mb of chrX
unedited cells
Target
6MB 5C enriched region
SPT
Drosophila embryo
Live imaging of chromatin topology and transcription
parS-lambda-evePr-PP7 (control without insulator)
Target
ParS-tagged (no insulator) evePromoter cassette (engineered reagent), MS2-tagged endogenous eve transcript and enhancer (fruit fly), PP7-tagged transcript from (no insulator) evePromoter cassette (engineered reagent)
SPT
Drosophila embryo
Live imaging of chromatin topology and transcription
parS-homie-noPr-PP7 (control without promoter)
Target
MS2-tagged endogenous eve transcript and enhancer (fruit fly), ParS-tagged homie (no promoter) cassette (engineered reagent), PP7-tagged transcript from homie (no promoter) cassette (engineered reagent)
SPT
Drosophila embryo
Live imaging of chromatin topology and transcription
parS-homie-evePr-PP7
Target
ParS-tagged homie-evePromoter cassette (engineered reagent), MS2-tagged endogenous eve transcript and enhancer (fruit fly), PP7-tagged transcript from homie-evePromoter cassette (engineered reagent)
sci-Hi-C
ES_Tsix-stop differentiated to embryoid body
sciHi-C on ES_Tsix-stop cells
Embryoid body day 20
Enzyme
DpnII
sci-Hi-C
ES_Tsix-stop differentiated to embryoid body
sciHi-C on ES_Tsix-stop cells
Embryoid body day 7
Enzyme
DpnII
sci-Hi-C
ES_Tsix-stop
sciHi-C on ES_Tsix-stop cells
Undifferentiated mESCs
Enzyme
DpnII
sci-Hi-C
F123-CASTx129 differentiated to embryoid body
sciHi-C on F123 cells
Embryoid body day 20
Enzyme
DpnII
sci-Hi-C
F123-CASTx129 differentiated to embryoid body
sciHi-C on F123 cells
Embryoid body day 7
Enzyme
DpnII
sci-Hi-C
F123-CASTx129
sciHi-C on F123 cells
Undifferentiated mESCs
Enzyme
DpnII
sci-Hi-C
F121-6-CASTx129 differentiated to embryoid body
sciHi-C on F121-6 cells
Embryoid body day 20
Enzyme
DpnII
sci-Hi-C
F121-6-CASTx129 differentiated to embryoid body
sciHi-C on F121-6 cells
Embryoid body day 7
Enzyme
DpnII